Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABQ054_RS16825 Genome accession   NZ_CP168190
Coordinates   3948941..3950200 (+) Length   419 a.a.
NCBI ID   WP_104551204.1    Uniprot ID   -
Organism   Xanthomonas hortorum pv. hederae strain WHRI 7714     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3943941..3955200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQ054_RS16800 (ABQ054_016800) - 3945058..3945240 (+) 183 WP_104551199.1 YhfG family protein -
  ABQ054_RS16805 (ABQ054_016805) - 3945237..3945836 (+) 600 WP_104551200.1 Fic family protein -
  ABQ054_RS16810 (ABQ054_016810) pilB 3945879..3947615 (-) 1737 WP_104551201.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABQ054_RS16815 (ABQ054_016815) - 3947657..3948070 (-) 414 WP_104551202.1 pilin -
  ABQ054_RS16820 (ABQ054_016820) comP 3948167..3948595 (-) 429 WP_104551203.1 pilin Machinery gene
  ABQ054_RS16825 (ABQ054_016825) pilC 3948941..3950200 (+) 1260 WP_104551204.1 type II secretion system F family protein Machinery gene
  ABQ054_RS16830 (ABQ054_016830) - 3950207..3951070 (+) 864 WP_002812278.1 A24 family peptidase -
  ABQ054_RS16835 (ABQ054_016835) coaE 3951084..3951707 (+) 624 WP_104551205.1 dephospho-CoA kinase -
  ABQ054_RS16840 (ABQ054_016840) - 3952239..3952640 (+) 402 WP_104551206.1 SymE family type I addiction module toxin -
  ABQ054_RS16845 (ABQ054_016845) - 3952717..3953825 (+) 1109 WP_374151416.1 IS3 family transposase -
  ABQ054_RS16850 (ABQ054_016850) - 3953920..3954210 (+) 291 WP_104552062.1 DUF1778 domain-containing protein -
  ABQ054_RS16855 (ABQ054_016855) - 3954207..3954698 (+) 492 WP_104552061.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45781.16 Da        Isoelectric Point: 10.3007

>NTDB_id=1042979 ABQ054_RS16825 WP_104551204.1 3948941..3950200(+) (pilC) [Xanthomonas hortorum pv. hederae strain WHRI 7714]
MSVARNVIKKQPADRSSSQMQPFVWEGTDKRGIKMKGEQGARNVNMLRAELRRQGITPTVVKPKPKPLFGAAGKKVGPKD
IAFFSRQMATMMKSGVPIVASLEIIGEGHKNPRMRKMVGQIRTDIEGGSSLHEAISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVANYKENIEALKGKIKKALFYPAMVVAVALIVSAILLIFVVPQFEEVFKGFGAELPAFTQLIVGASRFMVSYWWA
LLFIVGGAAIGFVYAYKRSLRMQHGMDRLILKVPVIGQIMHNSAISRFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1042979 ABQ054_RS16825 WP_104551204.1 3948941..3950200(+) (pilC) [Xanthomonas hortorum pv. hederae strain WHRI 7714]
ATGTCTGTCGCGCGTAACGTGATCAAGAAGCAGCCAGCCGACCGTAGCAGCAGCCAGATGCAACCTTTCGTATGGGAGGG
GACGGACAAGCGTGGCATAAAGATGAAGGGGGAGCAGGGGGCACGCAACGTGAATATGCTGCGTGCAGAGCTTCGTCGGC
AGGGAATTACGCCCACTGTCGTCAAACCAAAACCTAAGCCACTTTTCGGCGCTGCTGGCAAAAAGGTCGGCCCCAAGGAC
ATTGCTTTTTTCAGTCGTCAGATGGCGACCATGATGAAGTCCGGCGTCCCTATCGTCGCATCCCTAGAGATCATCGGCGA
GGGCCATAAGAACCCGCGAATGAGGAAGATGGTCGGCCAAATAAGGACCGACATCGAGGGCGGCTCTTCGCTGCATGAAG
CAATTAGCAAGCATCCGGTGCAATTTGACGAACTCTACCGCAATCTTGTCCGCGCGGGCGAAGGCGCTGGCGTACTCGAG
ACAGTGCTAGATACTGTCGCCAACTATAAAGAAAACATCGAGGCCCTGAAAGGCAAGATCAAGAAGGCCCTCTTCTATCC
CGCAATGGTGGTAGCAGTTGCCCTTATTGTTAGCGCCATTTTGCTGATTTTCGTCGTCCCCCAGTTCGAAGAGGTCTTCA
AGGGTTTCGGCGCAGAGCTACCCGCGTTCACACAGCTGATCGTGGGAGCTTCACGCTTCATGGTCAGTTATTGGTGGGCT
CTATTGTTCATTGTAGGCGGGGCAGCCATTGGCTTCGTGTACGCATACAAGCGTTCACTACGCATGCAACATGGCATGGA
TCGTTTGATCCTGAAGGTGCCTGTGATTGGACAGATCATGCATAACAGTGCGATCTCGCGGTTCGCTCGAACTACCGCTG
TTACGTTTAAGGCAGGTGTTCCGCTGGTGGAGGCACTAGGCATCGTGGCGGGCGCCACAGGCAACAAAGTGTACGAAGAA
GCAGTGCTACGCATGCGGGACGACGTGTCAGTTGGCTATCCAGTCAACATGGCAATGAAGCAGGTCAACCTGTTTCCCCA
TATGGTGATCCAGATGACCGCAATCGGTGAAGAAGCAGGCGCGCTGGACGCCATGCTGTTCAAGGTTGCCGAGTACTTCG
AACAGGAGGTCAACAACGCTGTGGATGCGCTTAGCAGTTTGTTGGAGCCAATGATCATGGTGTTTATTGGCACCATCGTA
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.04

94.511

0.511
  pilC Legionella pneumophila strain ERS1305867

52.346

96.659

0.506
  pilC Acinetobacter baylyi ADP1

51.597

97.136

0.501
  pilC Acinetobacter baumannii D1279779

50.124

96.181

0.482
  pilG Neisseria gonorrhoeae MS11

44.389

95.704

0.425
  pilG Neisseria meningitidis 44/76-A

43.89

95.704

0.42
  pilC Vibrio cholerae strain A1552

40.5

95.465

0.387
  pilC Vibrio campbellii strain DS40M4

38.958

96.181

0.375

Multiple sequence alignment