Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   QOR55_RS00265 Genome accession   NZ_OX460911
Coordinates   32271..33032 (+) Length   253 a.a.
NCBI ID   WP_001266269.1    Uniprot ID   -
Organism   Streptococcus agalactiae isolate MRI Z2-322     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 27271..38032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR55_RS00250 - 28605..29906 (+) 1302 WP_283572972.1 CHAP domain-containing protein -
  QOR55_RS00255 - 30030..30998 (+) 969 WP_000122450.1 ribose-phosphate diphosphokinase -
  QOR55_RS00260 - 31106..32281 (+) 1176 WP_000171460.1 pyridoxal phosphate-dependent aminotransferase -
  QOR55_RS00265 recO 32271..33032 (+) 762 WP_001266269.1 DNA repair protein RecO Machinery gene
  QOR55_RS00270 - 33095..33973 (+) 879 WP_000420130.1 type II CAAX endopeptidase family protein -
  QOR55_RS00275 plsX 34051..35043 (+) 993 WP_000717409.1 phosphate acyltransferase PlsX -
  QOR55_RS00280 - 35054..35293 (+) 240 WP_000085641.1 phosphopantetheine-binding protein -
  QOR55_RS00285 purC 35417..36121 (+) 705 WP_001064658.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 29668.10 Da        Isoelectric Point: 6.2989

>NTDB_id=1042977 QOR55_RS00265 WP_001266269.1 32271..33032(+) (recO) [Streptococcus agalactiae isolate MRI Z2-322]
MRVSQTYGLVLYNRNYREDDKLVKIFTETEGKRMFFVKHASKSKFNAVLQPLTIAHFILKINDNGLSYIDDYKEVLAFQE
INSDLFKLSYASYITSLADVAISDNVADAQLFIFLKKTLELIEDGLDYEILTNIFEVQLLERFGVALNFHDCVFCHRAGL
PFDFSHKYSGLLCPNHYYKDERRNHLDPNMLYLINRFQSIQFDDLQTISVKPEMKLKIRQFLDMIYDEYVGIHLKSKKFI
DDLSSWGSIMKSD

Nucleotide


Download         Length: 762 bp        

>NTDB_id=1042977 QOR55_RS00265 WP_001266269.1 32271..33032(+) (recO) [Streptococcus agalactiae isolate MRI Z2-322]
ATGAGGGTTAGTCAAACATACGGTCTCGTTTTGTATAATCGTAATTATCGTGAAGATGATAAATTAGTTAAAATCTTTAC
GGAGACTGAGGGGAAAAGGATGTTTTTTGTAAAGCATGCTTCAAAGTCAAAATTCAATGCTGTGCTCCAACCTTTGACTA
TTGCTCATTTTATTTTAAAAATTAATGATAATGGTCTTTCTTATATTGATGATTATAAAGAAGTTTTAGCATTTCAAGAA
ATTAATTCAGACTTGTTTAAGTTGTCATATGCGAGTTATATTACTTCTTTGGCTGATGTGGCTATTAGTGATAATGTAGC
GGATGCTCAATTATTTATTTTCCTAAAGAAAACGTTAGAATTGATTGAGGACGGTTTAGATTATGAGATTCTAACGAATA
TTTTTGAAGTACAACTACTAGAGAGGTTCGGTGTTGCTTTAAATTTTCATGATTGTGTTTTTTGTCATAGGGCAGGATTA
CCTTTTGATTTTTCACACAAATATTCTGGATTATTATGTCCAAACCATTATTATAAAGACGAGAGAAGAAACCACCTAGA
TCCTAATATGCTGTACTTAATCAATCGTTTTCAGTCAATTCAATTTGATGATTTACAAACAATTTCTGTGAAACCTGAGA
TGAAACTTAAAATTCGTCAATTTTTGGACATGATTTACGATGAATATGTAGGGATTCATCTTAAAAGTAAAAAATTTATT
GATGATTTGTCTAGTTGGGGAAGTATTATGAAATCAGATTAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-73)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

64.113

98.024

0.628

Multiple sequence alignment