Detailed information NTG1042952

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: ABQ049_RS07810
• Genome accession: NZ_CP168186
• Coordinates: 1846309..1847439 (+)
• Length: 376 a.a.
• NCBI ID: WP_006448884.1
• Uniprot ID: A0A0G8P0N2
• Organism: Xanthomonas hortorum pv. hederae strain WHRI 7717B
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	1847677..1849913	1846309..1847439	flank	238

Gene organization within MGE regions

Location: 1846309..1849913

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABQ049_RS07810 (ABQ049_007810)	pilU	1846309..1847439 (+)	1131	WP_006448884.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
ABQ049_RS07820 (ABQ049_007820)	-	1848558..1848875 (+)	318	Protein_1525	YitT family protein	-
ABQ049_RS07825 (ABQ049_007825)	-	1848933..1849913 (+)	981	WP_374151442.1	IS5 family transposase	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 41991.26 Da
• Isoelectric Point: 6.7684

>NTDB_id=1042952 ABQ049_RS07810 WP_006448884.1 1846309..1847439(+) (pilU) [Xanthomonas hortorum pv. hederae strain WHRI 7717B]
MSTIDFTSFLKLMAHQKASDLFITSGMPPAIKVNGKISPITQTPLTAQQSRDLVLNVMTPSQREEFEKTHECNFAIGVSG
VGRFRVSCFYQRNQVGMVLRRIETRIPTVEELSLPPVIKTLAMTKRGIIIFVGATGTGKSTSLAAMIGYRNQNSTGHIIT
IEDPIEFVHKHEGCIITQREVGIDTDSWENALKNTLRQAPDVIMIGEVRTREGMDHAVAFAETGHLVLCTLHANNANQAM
DRIINFFPEDRRNQLLMDLSLNLKGVVAQQLIPTPDGRSRRVAMEIMLGTPLVQDYIRDGEIHKLKEIMKESTNLGMRTF
DQSLFELYQAGEISYEDALRYADSQNEVRLRIKLSQGGDAKTLAQGMDGVEIAEVR

Nucleotide

• Length: 1131 bp

>NTDB_id=1042952 ABQ049_RS07810 WP_006448884.1 1846309..1847439(+) (pilU) [Xanthomonas hortorum pv. hederae strain WHRI 7717B]
ATGAGCACTATCGACTTCACCTCGTTCCTCAAGCTGATGGCGCACCAGAAGGCGTCGGATCTGTTCATCACCTCGGGCAT
GCCGCCGGCGATCAAGGTCAACGGCAAGATCAGCCCGATCACCCAGACACCGCTGACGGCGCAACAAAGTCGCGATCTGG
TGTTGAACGTGATGACGCCGTCGCAGCGCGAAGAATTCGAAAAGACGCATGAGTGCAACTTCGCCATCGGCGTGTCAGGG
GTCGGGCGTTTTCGTGTGAGCTGTTTCTATCAGCGCAACCAGGTCGGCATGGTGCTGCGCCGGATTGAAACGCGGATTCC
CACGGTGGAAGAGTTGAGCCTGCCGCCGGTGATCAAGACGCTGGCGATGACCAAGCGCGGCATCATCATTTTCGTCGGCG
CCACCGGTACCGGTAAGTCGACCTCGCTGGCGGCGATGATCGGTTACCGCAACCAGAATTCCACCGGGCACATCATCACC
ATCGAAGATCCGATCGAATTCGTGCACAAGCACGAAGGCTGCATCATCACCCAGCGCGAAGTCGGCATCGATACCGACAG
CTGGGAAAACGCGCTGAAAAACACCCTGCGCCAGGCGCCGGACGTGATCATGATCGGCGAGGTGCGTACCCGCGAAGGGA
TGGACCACGCGGTGGCATTCGCTGAAACCGGCCATCTGGTGCTGTGCACCCTGCATGCCAACAACGCCAACCAGGCGATG
GACCGCATCATCAACTTCTTCCCGGAAGATCGCCGCAATCAGCTGCTGATGGATCTGTCGCTCAATCTCAAGGGCGTGGT
CGCGCAGCAATTGATTCCGACTCCGGACGGGCGCAGCCGCCGCGTGGCGATGGAGATCATGTTGGGCACCCCGCTGGTGC
AGGATTACATCCGCGACGGCGAGATCCACAAGCTCAAGGAGATCATGAAGGAGTCCACCAACCTGGGCATGCGCACCTTC
GATCAGAGCCTGTTCGAGCTGTATCAGGCCGGCGAAATCAGCTACGAAGACGCGCTGCGCTATGCCGATTCGCAGAACGA
AGTGCGTCTGCGCATCAAACTCTCGCAGGGCGGCGACGCCAAGACGCTGGCGCAGGGGATGGATGGTGTGGAGATTGCCG
AGGTTCGGTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (117-272)

3D structure

• AlphaFold DB: A0A0G8P0N2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	66.667	98.138	0.654
pilU	Acinetobacter baylyi ADP1	64.426	94.947	0.612
pilU	Vibrio cholerae strain A1552	53.371	94.681	0.505
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	42.017	94.947	0.399
pilT	Acinetobacter baumannii strain A118	40.116	91.489	0.367
pilT	Acinetobacter nosocomialis M2	40.116	91.489	0.367
pilT	Acinetobacter baumannii D1279779	40.116	91.489	0.367
pilT	Pseudomonas aeruginosa PAK	40.896	89.096	0.364