Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACBZ92_RS21735 Genome accession   NZ_CP168146
Coordinates   4007873..4009114 (-) Length   413 a.a.
NCBI ID   WP_088049161.1    Uniprot ID   -
Organism   Priestia aryabhattai strain JSH01     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 4002873..4014114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACBZ92_RS21715 (ACBZ92_21715) spoVS 4003433..4003693 (-) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  ACBZ92_RS21720 (ACBZ92_21720) - 4003917..4004714 (-) 798 WP_028411380.1 TIGR00282 family metallophosphoesterase -
  ACBZ92_RS21725 (ACBZ92_21725) rny 4004796..4006355 (-) 1560 WP_013058803.1 ribonuclease Y -
  ACBZ92_RS21730 (ACBZ92_21730) recA 4006636..4007673 (-) 1038 WP_013058804.1 recombinase RecA Machinery gene
  ACBZ92_RS21735 (ACBZ92_21735) cinA 4007873..4009114 (-) 1242 WP_088049161.1 competence/damage-inducible protein A Machinery gene
  ACBZ92_RS21740 (ACBZ92_21740) pgsA 4009131..4009715 (-) 585 WP_013058806.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACBZ92_RS21745 (ACBZ92_21745) - 4009860..4010852 (-) 993 WP_224357775.1 RodZ domain-containing protein -
  ACBZ92_RS21750 (ACBZ92_21750) - 4010865..4011656 (-) 792 WP_071271126.1 DUF3388 domain-containing protein -
  ACBZ92_RS21755 (ACBZ92_21755) - 4011868..4012128 (-) 261 WP_013058809.1 DUF3243 domain-containing protein -
  ACBZ92_RS21760 (ACBZ92_21760) ymfI 4012194..4012919 (-) 726 WP_088049163.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44942.03 Da        Isoelectric Point: 4.7757

>NTDB_id=1042554 ACBZ92_RS21735 WP_088049161.1 4007873..4009114(-) (cinA) [Priestia aryabhattai strain JSH01]
MMNAEIIGVGSELLLGQIANTNAQYLSKKLAELGINVYYHTVVGDNAQRLKEVIATAQTRAELIIFTGGLGPTKDDLTKE
TIASVLGVELTTNAEALESIEAYFKQSNRIMTPNNKKQAIVLEGSTVLPNDYGMAPGMGLTVEGKHYMLFPGPPKELYPM
YESYGQEFLAQKLELKESIESRVLRFFGIGESQLETEIEDLLDAQTNPTIAPLAGDGEVTLRLTAKHADVAEAQRMLDEV
EKTISERVGEYLYGYETTSLHNELVKELTAQGLTIASAESLTGGLFSERLTTVSGAGEVVKGSLVAYHYEIKQNILGVSE
HTLNQYGAVSEQCAAEMAQHIQQLCKTDIGIGFTGVAGPSKQEGQPVGTVYIGVAYKDQAPQVYSLQLSGSRQGIRSRTV
NYGCHYVLKMIKN

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=1042554 ACBZ92_RS21735 WP_088049161.1 4007873..4009114(-) (cinA) [Priestia aryabhattai strain JSH01]
ATGATGAACGCTGAAATTATTGGAGTCGGCTCTGAGCTGCTGCTTGGACAAATTGCCAATACAAATGCTCAGTATTTATC
GAAAAAATTAGCCGAGCTTGGAATTAATGTTTACTATCATACGGTAGTAGGAGATAATGCACAGCGCTTAAAAGAAGTGA
TTGCTACAGCTCAAACGCGTGCAGAGTTAATTATTTTCACAGGCGGGCTTGGTCCTACAAAAGATGATTTAACAAAAGAA
ACAATTGCGAGTGTGCTAGGAGTAGAGCTGACAACAAATGCGGAAGCACTTGAAAGCATTGAAGCCTATTTCAAACAGTC
AAATCGTATCATGACACCTAACAATAAAAAACAGGCAATTGTGCTAGAAGGTTCGACAGTGCTTCCTAATGACTACGGAA
TGGCTCCAGGTATGGGACTTACGGTAGAGGGAAAACACTATATGCTATTCCCGGGGCCGCCAAAAGAGCTCTATCCAATG
TATGAATCATATGGTCAAGAATTTTTAGCTCAAAAGCTTGAATTAAAAGAAAGTATTGAATCACGCGTTCTTCGCTTTTT
CGGAATAGGGGAATCCCAGCTTGAGACGGAAATTGAAGACTTGCTTGACGCGCAAACAAACCCGACGATTGCGCCGCTTG
CAGGGGATGGAGAAGTAACGCTCCGCTTAACTGCAAAGCATGCTGATGTCGCTGAAGCACAGCGCATGTTAGATGAAGTG
GAAAAAACCATCTCAGAGCGCGTAGGCGAGTATTTATATGGCTATGAAACAACTTCCTTACATAATGAACTAGTGAAAGA
ATTAACGGCGCAAGGGTTAACGATTGCTTCGGCTGAAAGTTTAACCGGCGGTTTATTCAGCGAACGTTTAACAACCGTGT
CAGGTGCTGGAGAAGTTGTAAAAGGTAGCCTGGTAGCCTATCATTATGAAATCAAGCAAAATATTCTCGGAGTGAGTGAA
CACACGCTGAATCAGTATGGAGCCGTTAGCGAGCAGTGCGCGGCTGAAATGGCTCAGCATATTCAACAGTTATGCAAAAC
GGATATTGGCATCGGTTTTACGGGTGTAGCTGGACCCTCTAAACAAGAAGGACAGCCTGTAGGAACAGTATATATAGGGG
TAGCCTATAAAGATCAAGCTCCTCAAGTTTACAGCCTGCAGCTATCTGGAAGCCGCCAGGGGATTCGTTCACGAACGGTT
AATTATGGCTGTCATTACGTATTAAAGATGATAAAAAACTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Competence-damaged protein (CinA)

(258-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.413

99.031

0.588
  cinA Streptococcus mitis NCTC 12261

46.667

100

0.475
  cinA Streptococcus mitis SK321

46.19

100

0.47
  cinA Streptococcus pneumoniae TIGR4

45.952

100

0.467
  cinA Streptococcus pneumoniae Rx1

45.476

100

0.462
  cinA Streptococcus pneumoniae R6

45.476

100

0.462
  cinA Streptococcus pneumoniae D39

45.238

100

0.46
  cinA Streptococcus mutans UA159

44.634

99.274

0.443

Multiple sequence alignment