Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QUE92_RS10060 Genome accession   NZ_AP028153
Coordinates   2079257..2080519 (-) Length   420 a.a.
NCBI ID   WP_286309084.1    Uniprot ID   -
Organism   Lactiplantibacillus plantarum strain AWA2045     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2074257..2085519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE92_RS10045 (AWA2045_19720) - 2075303..2076109 (-) 807 WP_003641506.1 TIGR00282 family metallophosphoesterase -
  QUE92_RS10050 (AWA2045_19730) rny 2076233..2077792 (-) 1560 WP_003644638.1 ribonuclease Y -
  QUE92_RS10055 (AWA2045_19740) recA 2078023..2079165 (-) 1143 WP_003641504.1 recombinase RecA Machinery gene
  QUE92_RS10060 (AWA2045_19750) cinA 2079257..2080519 (-) 1263 WP_286309084.1 competence/damage-inducible protein A Machinery gene
  QUE92_RS10065 (AWA2045_19760) pgsA 2080791..2081375 (-) 585 WP_003641502.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QUE92_RS10070 (AWA2045_19770) - 2081398..2082270 (-) 873 WP_003641501.1 RodZ domain-containing protein -
  QUE92_RS10075 (AWA2045_19780) - 2082374..2083675 (-) 1302 WP_003644640.1 pitrilysin family protein -
  QUE92_RS10080 (AWA2045_19790) - 2083672..2084937 (-) 1266 WP_003644641.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45185.29 Da        Isoelectric Point: 5.6636

>NTDB_id=104099 QUE92_RS10060 WP_286309084.1 2079257..2080519(-) (cinA) [Lactiplantibacillus plantarum strain AWA2045]
MQAEIIAVGTEILLGQITNTNSTYIARGLAELGIDSYYQTVVGDNRQRLSTVIEIAAQRNDLVILTGGLGPTKDDLTKQT
LAHYLNVALVEDQAAMQKITAWFATNDKVMTANNRLQALYPAGAQPLTNHNGMAVGAFYQSENSADFLLLPGPPRELAVM
FDSEAKPKLAAAYGEQAQIYSRVMRFYGISESELATRLHPLIDEQQAVTIAPYAKTNEVTLRLSAQAMTETAARGMIDKV
DHQIKATIGPYFYGYGDDNSLVTTVINQMIAAKLSITAAESLTAGLFQSTIGSVSGVSAIFPGGFVTYANEAKHQLVNVP
QAIIDAEGVVSEATAKAMASGAKQQLNTDVGISFTGIAGPGTLEGQPAGTVWIGLAYRDRPVKAKQYHFAGNRQQIRERS
VMAGLDLLRHALNEDTDLKK

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=104099 QUE92_RS10060 WP_286309084.1 2079257..2080519(-) (cinA) [Lactiplantibacillus plantarum strain AWA2045]
ATGCAAGCAGAAATAATCGCGGTTGGTACCGAGATTTTACTGGGTCAGATTACGAACACGAATAGTACGTACATCGCACG
TGGATTGGCCGAATTAGGAATTGATAGCTATTATCAAACGGTGGTTGGTGATAATCGGCAACGTTTGTCGACCGTCATTG
AAATTGCGGCCCAGCGGAATGACTTAGTTATTTTAACGGGTGGTTTGGGGCCGACCAAGGATGACTTGACGAAGCAGACG
CTCGCGCATTATTTGAATGTTGCCTTGGTTGAAGATCAGGCAGCAATGCAAAAAATTACGGCCTGGTTTGCCACTAATGA
CAAAGTAATGACGGCCAACAACCGATTACAGGCATTGTATCCGGCAGGCGCGCAACCGTTGACTAATCATAACGGAATGG
CTGTTGGTGCGTTTTATCAGTCAGAAAATAGTGCTGATTTCTTGTTATTGCCAGGTCCACCCCGTGAGTTAGCCGTAATG
TTTGATTCTGAGGCAAAACCGAAATTGGCAGCTGCATATGGGGAACAAGCCCAAATCTATTCGCGAGTGATGCGTTTTTA
TGGCATCAGTGAGTCTGAATTGGCGACCCGGTTGCACCCCTTGATTGATGAACAGCAGGCGGTTACGATCGCACCCTATG
CCAAGACTAACGAGGTTACCCTCAGATTGAGTGCCCAAGCTATGACGGAAACGGCTGCAAGGGGAATGATCGACAAAGTT
GACCACCAGATCAAGGCTACCATTGGGCCGTACTTTTACGGTTATGGAGACGATAACTCGTTAGTTACTACTGTTATTAA
TCAAATGATTGCGGCTAAGCTGAGTATTACAGCCGCTGAAAGCTTAACAGCTGGGCTGTTTCAGAGTACCATCGGCAGTG
TGTCCGGGGTCTCCGCAATCTTTCCGGGCGGCTTTGTAACGTATGCGAATGAGGCCAAACATCAGCTAGTGAACGTTCCA
CAAGCAATTATTGACGCTGAGGGCGTGGTTTCAGAAGCGACCGCTAAGGCCATGGCGAGTGGTGCTAAGCAGCAGCTAAA
TACTGATGTTGGTATCAGTTTTACAGGCATTGCCGGTCCAGGAACCTTGGAAGGTCAACCGGCTGGAACGGTATGGATTG
GTCTTGCTTACCGTGATCGACCCGTGAAGGCCAAGCAGTACCATTTTGCTGGTAATCGACAACAAATTCGGGAACGCAGT
GTGATGGCCGGGTTAGACCTATTGAGACATGCATTGAATGAAGATACGGACTTAAAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Competence-damaged protein (CinA)

(260-411)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

48.113

100

0.486
  cinA Streptococcus pneumoniae TIGR4

47.877

100

0.483
  cinA Streptococcus pneumoniae Rx1

47.877

100

0.483
  cinA Streptococcus pneumoniae R6

47.877

100

0.483
  cinA Streptococcus pneumoniae D39

47.642

100

0.481
  cinA Streptococcus mitis NCTC 12261

46.934

100

0.474
  cinA Streptococcus mutans UA159

47.711

98.81

0.471
  cinA Bacillus subtilis subsp. subtilis str. 168

44.068

98.333

0.433
  cinA Streptococcus suis isolate S10

39.423

99.048

0.39

Multiple sequence alignment