Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ACDW34_RS01420 Genome accession   NZ_CP167896
Coordinates   302545..304710 (+) Length   721 a.a.
NCBI ID   WP_372403868.1    Uniprot ID   -
Organism   Acinetobacter piscicola strain p38     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 297545..309710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDW34_RS01400 (ACDW34_01400) pilM 299505..300563 (+) 1059 WP_130074425.1 pilus assembly protein PilM Machinery gene
  ACDW34_RS01405 (ACDW34_01405) pilN 300563..301195 (+) 633 WP_130074426.1 PilN domain-containing protein Machinery gene
  ACDW34_RS01410 (ACDW34_01410) - 301192..301855 (+) 664 Protein_271 type 4a pilus biogenesis protein PilO -
  ACDW34_RS01415 (ACDW34_01415) pilP 302001..302528 (+) 528 WP_130074428.1 pilus assembly protein PilP Machinery gene
  ACDW34_RS01420 (ACDW34_01420) pilQ 302545..304710 (+) 2166 WP_372403868.1 type IV pilus secretin PilQ Machinery gene
  ACDW34_RS01425 (ACDW34_01425) aroK 304747..305289 (+) 543 WP_130074430.1 shikimate kinase AroK -
  ACDW34_RS01430 (ACDW34_01430) aroB 305315..306394 (+) 1080 WP_372403869.1 3-dehydroquinate synthase -
  ACDW34_RS01435 (ACDW34_01435) - 306408..307277 (+) 870 WP_372403870.1 hypothetical protein -

Sequence

Protein


Download         Length: 721 a.a.        Molecular weight: 78267.51 Da        Isoelectric Point: 5.5112

>NTDB_id=1040152 ACDW34_RS01420 WP_372403868.1 302545..304710(+) (pilQ) [Acinetobacter piscicola strain p38]
MKNSIKNFWGGDGIFMNTYLRQFSMAAVSIAVMQAAAAQVTMTNVVPMQLPGQGTEIRVMFNGLPPQPQAYQLESPSRLV
LDFNDTKQGLTQAAIPVSTSEASAVNVASDAQRSRLTVNLNNKSTFTTRVEGNTFILKINSANQSNTLENFAPATAKSAQ
GVSDIGFQRGSKGEGQVSINLAGVNTPVDVQQQGSKVVVRVLGNKIPTHLIRRLNVNDFATPVATIDAHNDGNNGVITIQ
STGSYEYMAYQAEDKLTVSLKRPEDTRPNKPSSSQTYTGKKISLDFQDIEVRRVLQLLADFTGVNMVAADSVQGNITLRL
KDVPWDQALDIILKTKNLDKRRSGDVIWIAPVPELIKSEEDEAKAIAQSIKLAPIQTEYIQLSYAKVADVLKLLEDSRNV
KNAQTNGTTNTDSLALESLLSSRGSAVADTRTNTLIINDTAQNIDKVRKMVDLLDVSVKQVMIEARIVRASTGFSKEMGV
KWGILSQGVPRNNDLLVGGSDQSLWDLKTPDDDGKITITRPDNLNVDLGVANAAGKIAFGLISLSDFMLDLELSALQADG
YGEVISTPKVMTADKQKAKVSSGQQIPYTTTTNSAAGSTATTEFKDALLSLDVTPSITPDGKVQMQLNITSDSRGDTAPN
GEVILNKNEINTNVLVDNGETVVLGGIFEQETQNTTTKVPFFGDLPYIGRLFRNDAKVENKRELLIFVTPRIINDSRSRN
H

Nucleotide


Download         Length: 2166 bp        

>NTDB_id=1040152 ACDW34_RS01420 WP_372403868.1 302545..304710(+) (pilQ) [Acinetobacter piscicola strain p38]
ATGAAAAATAGCATTAAAAACTTTTGGGGTGGGGACGGCATATTTATGAACACTTATTTACGTCAATTTTCAATGGCGGC
AGTATCGATTGCGGTGATGCAAGCAGCTGCTGCACAAGTGACAATGACCAATGTAGTACCCATGCAACTACCTGGGCAAG
GTACAGAAATTCGTGTCATGTTTAATGGTTTACCACCACAACCTCAAGCATACCAATTAGAGTCACCCTCTCGCTTAGTA
CTTGACTTTAATGATACGAAACAAGGATTAACACAAGCAGCAATTCCTGTGTCTACTTCAGAAGCTTCGGCAGTTAATGT
TGCTTCGGATGCACAGCGTTCACGTTTGACTGTTAATCTAAATAATAAAAGTACTTTCACAACACGTGTTGAAGGCAATA
CTTTTATTTTAAAAATTAATAGTGCCAATCAAAGCAATACTCTTGAAAATTTTGCACCAGCAACAGCAAAATCTGCACAA
GGTGTATCGGATATTGGCTTCCAACGTGGTAGCAAAGGTGAAGGTCAGGTGAGTATCAATTTGGCAGGTGTGAATACTCC
TGTCGATGTACAACAACAGGGCAGTAAAGTTGTTGTGCGCGTGTTAGGTAATAAAATTCCGACACACTTAATTCGCCGTT
TAAATGTCAATGATTTTGCAACACCTGTAGCAACTATTGATGCACACAATGATGGTAATAATGGTGTGATTACCATTCAG
TCCACTGGTAGCTATGAATATATGGCATACCAAGCTGAAGATAAACTCACAGTCAGTCTGAAACGCCCTGAAGACACACG
TCCAAACAAACCGAGTTCAAGTCAAACGTATACAGGTAAGAAAATCTCTTTAGACTTCCAAGATATTGAAGTACGCCGTG
TATTGCAGTTATTGGCTGATTTTACCGGAGTAAACATGGTTGCTGCAGACTCTGTGCAAGGCAATATTACCTTACGTTTA
AAAGATGTCCCTTGGGATCAGGCACTTGATATTATCCTGAAAACCAAAAACTTGGACAAACGCCGTAGTGGTGATGTGAT
TTGGATTGCACCTGTACCTGAGTTGATCAAGTCAGAAGAAGATGAAGCTAAAGCGATTGCGCAGAGCATTAAACTCGCAC
CGATTCAAACTGAATACATTCAACTCAGTTATGCCAAAGTTGCCGATGTACTAAAATTATTAGAGGATTCGCGCAACGTT
AAAAATGCACAGACAAATGGCACTACAAATACTGACTCATTAGCACTTGAAAGTTTACTTAGTTCACGTGGTAGTGCTGT
TGCAGATACACGAACCAATACATTGATTATCAATGATACTGCACAGAATATTGATAAAGTTCGTAAAATGGTCGATTTGC
TTGATGTGTCTGTAAAGCAAGTGATGATTGAAGCACGTATTGTCCGTGCATCTACGGGTTTCTCGAAAGAGATGGGCGTA
AAATGGGGGATTTTATCGCAAGGTGTACCTCGTAATAATGACTTGCTGGTTGGTGGGAGTGACCAATCGCTTTGGGATTT
AAAAACCCCTGATGATGATGGCAAAATTACCATTACTCGTCCAGATAATCTAAACGTTGACTTAGGTGTGGCCAATGCTG
CAGGTAAAATTGCATTTGGTTTGATTAGTTTGTCTGATTTTATGTTGGATTTAGAATTATCTGCTTTACAAGCAGATGGT
TATGGTGAGGTGATTTCGACACCAAAAGTCATGACAGCCGATAAGCAAAAAGCGAAAGTGTCTTCAGGTCAACAGATTCC
ATATACCACAACGACAAATTCTGCTGCAGGTTCAACAGCAACCACTGAATTTAAAGATGCATTACTGAGTTTAGATGTGA
CACCAAGTATTACACCTGATGGGAAAGTTCAAATGCAATTGAACATTACCAGCGATTCACGTGGTGATACAGCACCAAAT
GGTGAAGTGATTTTAAATAAAAATGAAATCAATACCAATGTGCTTGTTGATAATGGTGAAACTGTGGTGTTAGGTGGTAT
TTTTGAACAAGAAACTCAAAATACCACAACGAAAGTTCCGTTCTTTGGTGATTTACCTTATATCGGGCGTTTATTCCGTA
ATGATGCTAAAGTTGAAAACAAACGAGAGTTGTTAATCTTTGTGACTCCTCGAATTATTAATGACAGTCGTAGTAGAAAT
CATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(55-137)

Bacterial type II/III secretion system short domain (Secretin_N)

(378-460)

Bacterial type II and III secretion system protein (Secretin)

(555-713)

Secretin and TonB N terminus short domain (STN)

(309-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii strain A118

71.823

100

0.721
  pilQ Acinetobacter baumannii D1279779

71.823

100

0.721
  comQ Acinetobacter baylyi ADP1

70.323

98.613

0.693
  pilQ Pseudomonas aeruginosa PAK

38.019

100

0.394
  pilQ Legionella pneumophila strain Lp02

38.406

95.7

0.368
  pilQ Legionella pneumophila strain ERS1305867

38.261

95.7

0.366

Multiple sequence alignment