Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AB8613_RS11455 Genome accession   NZ_CP167894
Coordinates   2465314..2466543 (-) Length   409 a.a.
NCBI ID   WP_285954234.1    Uniprot ID   -
Organism   Vibrio sp. BS-M-Sm-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2460314..2471543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8613_RS11425 (AB8613_11425) rplS 2460827..2461180 (+) 354 WP_004735514.1 50S ribosomal protein L19 -
  AB8613_RS11430 (AB8613_11430) - 2461488..2462659 (+) 1172 WP_210446792.1 IS3 family transposase -
  AB8613_RS11435 (AB8613_11435) yacG 2462717..2462914 (-) 198 WP_327783518.1 DNA gyrase inhibitor YacG -
  AB8613_RS11440 (AB8613_11440) zapD 2462995..2463735 (-) 741 WP_086711973.1 cell division protein ZapD -
  AB8613_RS11445 (AB8613_11445) coaE 2463762..2464376 (-) 615 WP_372383836.1 dephospho-CoA kinase -
  AB8613_RS11450 (AB8613_11450) pilD 2464379..2465248 (-) 870 WP_327783519.1 A24 family peptidase Machinery gene
  AB8613_RS11455 (AB8613_11455) pilC 2465314..2466543 (-) 1230 WP_285954234.1 type II secretion system F family protein Machinery gene
  AB8613_RS11460 (AB8613_11460) pilB 2466559..2468244 (-) 1686 WP_372383837.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AB8613_RS11465 (AB8613_11465) - 2468244..2468708 (-) 465 WP_372383838.1 pilin -
  AB8613_RS11470 (AB8613_11470) nadC 2468961..2469851 (-) 891 WP_285954237.1 carboxylating nicotinate-nucleotide diphosphorylase -
  AB8613_RS11475 (AB8613_11475) ampD 2469935..2470533 (+) 599 Protein_2140 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45309.35 Da        Isoelectric Point: 10.1285

>NTDB_id=1040132 AB8613_RS11455 WP_285954234.1 2465314..2466543(-) (pilC) [Vibrio sp. BS-M-Sm-2]
MSSKSKQSQLKSYHWKGINSSGKKVSGQTLALTELEVREKLKEQHIQIKKIKKKSISAVTRLTHRVKAKDITILTRQLAT
MLATGVPIVQAIKLVSDNHRKAEMKSILSHICKGVEAGTPISKAMRTASRHFDDLYTDLVATGELSGNLAQVFERLATYR
EKSEQLKSKVVKALIYPAMVVTVALTVSYLMLTMVIPEFESMFSGFGADLPWFTQQVLYLSHWMQTYSFYTAVGIGLVVL
IIYQLCQRSHSFRLSVSRLGLRFPVLGGILAKASIAKFSRTLSTSFSSGIPILMSLKTTAKTAGNLHYESAIIEVHRETA
AGMPMYIAMRNTNAFPEMVLQMVMIGEESGNLDDMLNKVASIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLP
IFNLMSVLG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=1040132 AB8613_RS11455 WP_285954234.1 2465314..2466543(-) (pilC) [Vibrio sp. BS-M-Sm-2]
ATGAGTAGCAAGTCCAAACAATCACAATTAAAAAGCTATCACTGGAAAGGCATTAATAGCTCAGGCAAGAAAGTGTCTGG
GCAGACCTTAGCGCTCACCGAATTGGAAGTACGAGAAAAGCTCAAAGAGCAGCACATTCAGATTAAGAAAATCAAAAAGA
AAAGCATCTCAGCCGTCACTCGTTTAACCCATAGAGTCAAAGCCAAGGACATCACTATTTTAACTCGGCAGCTCGCTACC
ATGCTGGCTACTGGCGTGCCTATCGTGCAAGCCATCAAGTTGGTCTCAGACAATCACCGCAAAGCAGAAATGAAATCGAT
TTTATCGCACATATGCAAAGGTGTAGAAGCCGGCACGCCAATCTCAAAAGCAATGCGAACTGCAAGTCGTCACTTTGATG
ACCTCTATACTGATTTGGTCGCGACAGGCGAACTCTCCGGCAACCTCGCACAAGTGTTCGAACGCTTAGCGACCTATCGA
GAAAAAAGCGAGCAGTTAAAGTCTAAAGTCGTCAAAGCACTGATTTATCCTGCCATGGTGGTCACGGTAGCACTGACCGT
TTCTTATTTAATGCTGACCATGGTGATTCCGGAATTTGAGTCGATGTTTTCAGGCTTTGGCGCCGACCTACCTTGGTTCA
CTCAACAAGTACTCTACCTTTCCCATTGGATGCAGACTTACAGTTTTTATACGGCTGTAGGCATAGGGCTTGTTGTCCTG
ATTATTTACCAACTGTGTCAGCGTTCCCACTCGTTCAGACTGTCTGTCAGTCGGCTAGGACTACGTTTTCCTGTTCTCGG
TGGCATATTAGCCAAAGCCTCTATTGCCAAGTTTAGCCGAACCTTATCAACAAGCTTTAGTTCTGGTATTCCGATTTTAA
TGAGCCTCAAAACCACAGCCAAAACCGCAGGTAATCTGCATTATGAATCAGCCATCATTGAAGTTCACCGAGAAACAGCT
GCAGGCATGCCGATGTATATCGCAATGCGCAATACCAACGCCTTCCCCGAAATGGTGTTGCAGATGGTGATGATTGGTGA
AGAGTCTGGCAACCTTGATGATATGCTCAATAAAGTCGCCTCGATTTACGAGTTTGAAGTAGACAACACCGTCGACAATT
TAGGCAAGATTCTAGAGCCACTGATCATCGTGTTTTTAGGCACCGTGGTTGGTGGGCTTGTGGTTGCGATGTACTTACCG
ATCTTTAATCTTATGAGTGTGTTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-197)

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

79

97.8

0.773
  pilC Vibrio campbellii strain DS40M4

73.529

99.756

0.733
  pilC Acinetobacter baylyi ADP1

41.809

100

0.418
  pilC Legionella pneumophila strain ERS1305867

42.607

97.555

0.416
  pilC Acinetobacter baumannii D1279779

42.079

98.778

0.416
  pilC Pseudomonas stutzeri DSM 10701

40.909

96.822

0.396
  pilG Neisseria gonorrhoeae MS11

39.85

97.555

0.389
  pilG Neisseria meningitidis 44/76-A

39.599

97.555

0.386

Multiple sequence alignment