Detailed information NTG1040131

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB8613_RS11450
• Genome accession: NZ_CP167894
• Coordinates: 2464379..2465248 (-)
• Length: 289 a.a.
• NCBI ID: WP_327783519.1
• Uniprot ID: -
• Organism: Vibrio sp. BS-M-Sm-2
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2459379..2470248

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB8613_RS11415 (AB8613_11415)	rimM	2459446..2460000 (+)	555	WP_017063236.1	ribosome maturation factor RimM	-
AB8613_RS11420 (AB8613_11420)	trmD	2460027..2460767 (+)	741	WP_019826347.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
AB8613_RS11425 (AB8613_11425)	rplS	2460827..2461180 (+)	354	WP_004735514.1	50S ribosomal protein L19	-
AB8613_RS11430 (AB8613_11430)	-	2461488..2462659 (+)	1172	WP_210446792.1	IS3 family transposase	-
AB8613_RS11435 (AB8613_11435)	yacG	2462717..2462914 (-)	198	WP_327783518.1	DNA gyrase inhibitor YacG	-
AB8613_RS11440 (AB8613_11440)	zapD	2462995..2463735 (-)	741	WP_086711973.1	cell division protein ZapD	-
AB8613_RS11445 (AB8613_11445)	coaE	2463762..2464376 (-)	615	WP_372383836.1	dephospho-CoA kinase	-
AB8613_RS11450 (AB8613_11450)	pilD	2464379..2465248 (-)	870	WP_327783519.1	A24 family peptidase	Machinery gene
AB8613_RS11455 (AB8613_11455)	pilC	2465314..2466543 (-)	1230	WP_285954234.1	type II secretion system F family protein	Machinery gene
AB8613_RS11460 (AB8613_11460)	pilB	2466559..2468244 (-)	1686	WP_372383837.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AB8613_RS11465 (AB8613_11465)	-	2468244..2468708 (-)	465	WP_372383838.1	pilin	-
AB8613_RS11470 (AB8613_11470)	nadC	2468961..2469851 (-)	891	WP_285954237.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32692.96 Da
• Isoelectric Point: 7.6335

>NTDB_id=1040131 AB8613_RS11450 WP_327783519.1 2464379..2465248(-) (pilD) [Vibrio sp. BS-M-Sm-2]
MEVFHYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIMMEREWQQECSEYFSQYKIPAPEGKFNLSIPRSTCPKCKTQLRIV
DNIPVLSWLFLKGKCHSCANPINARYPLVELLTAILCTMVASHFGFSYYAIALIFFTFALITATFIDLDTMLLPDQITLP
LVWYGIALALFNISPVSLQDSVVGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPMIILLSSLVGL
VFGLIQLRLKQQGIDKAFPFGPYLAIAGWVSLMWGNDIMGWYFTSVLGI

Nucleotide

• Length: 870 bp

>NTDB_id=1040131 AB8613_RS11450 WP_327783519.1 2464379..2465248(-) (pilD) [Vibrio sp. BS-M-Sm-2]
ATGGAAGTATTTCACTACTATCCTTGGCTATTCCCCGTATTAGCTTTCATTTTTAGCCTTCTTATCGGCAGCTTCCTCAA
CGTAGTCATACACCGTTTACCGATTATGATGGAACGCGAATGGCAACAAGAGTGCTCGGAATATTTCTCTCAATATAAAA
TTCCAGCACCAGAGGGAAAGTTTAATCTCAGCATTCCTCGTTCAACCTGCCCGAAATGCAAAACCCAATTAAGAATCGTC
GACAATATTCCAGTGTTAAGCTGGTTGTTCTTAAAAGGTAAGTGTCACAGCTGTGCCAATCCAATCAACGCTCGCTACCC
TTTGGTCGAACTGCTTACCGCAATACTTTGTACAATGGTTGCTAGCCACTTTGGTTTCAGTTACTACGCTATTGCTTTGA
TTTTTTTCACGTTTGCATTGATTACCGCAACCTTTATCGATCTCGATACTATGCTGTTGCCTGATCAAATTACCTTACCT
TTAGTTTGGTACGGTATCGCGTTAGCTCTGTTTAATATCAGCCCTGTATCGCTTCAAGATTCCGTGGTTGGTGCAATGGC
AGGTTACCTAGCACTTTGGTCGGTTTATTGGCTGTTCAAGCTGTTAACAGGCAAAGAAGGCATGGGTTACGGTGATTTCA
AGTTATTAGCTGCGCTTGGCGCTTGGCTTGGTTGGCAACACCTCCCAATGATCATTCTTCTATCCTCACTTGTCGGCTTA
GTTTTCGGATTGATTCAACTTCGCTTGAAACAACAAGGCATAGATAAAGCCTTTCCATTTGGACCTTACCTTGCGATTGC
GGGTTGGGTGAGTTTGATGTGGGGCAACGACATCATGGGCTGGTATTTCACTTCTGTACTAGGAATTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	74.74	100	0.747
pilD	Vibrio cholerae strain A1552	68.056	99.654	0.678
pilD	Acinetobacter nosocomialis M2	50.562	92.388	0.467
pilD	Acinetobacter baumannii D1279779	50.187	92.388	0.464
pilD	Neisseria gonorrhoeae MS11	48.263	89.619	0.433