Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | AB8613_RS03940 | Genome accession | NZ_CP167894 |
| Coordinates | 875813..876112 (-) | Length | 99 a.a. |
| NCBI ID | WP_372384528.1 | Uniprot ID | - |
| Organism | Vibrio sp. BS-M-Sm-2 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 870813..881112
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB8613_RS03915 (AB8613_03915) | - | 871251..872486 (+) | 1236 | WP_285953328.1 | pyridoxal phosphate-dependent aminotransferase | - |
| AB8613_RS03920 (AB8613_03920) | yfbR | 872655..873239 (+) | 585 | WP_285953329.1 | 5'-deoxynucleotidase | - |
| AB8613_RS03925 (AB8613_03925) | - | 873295..874638 (+) | 1344 | WP_372384526.1 | anti-phage deoxyguanosine triphosphatase | - |
| AB8613_RS03930 (AB8613_03930) | - | 874665..875264 (-) | 600 | WP_372384527.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| AB8613_RS03935 (AB8613_03935) | rrtA | 875274..875822 (+) | 549 | WP_146491717.1 | rhombosortase | - |
| AB8613_RS03940 (AB8613_03940) | comEA | 875813..876112 (-) | 300 | WP_372384528.1 | ComEA family DNA-binding protein | Machinery gene |
| AB8613_RS03945 (AB8613_03945) | ppiD | 876376..878241 (-) | 1866 | WP_372384529.1 | peptidylprolyl isomerase | - |
| AB8613_RS03950 (AB8613_03950) | - | 878461..878733 (-) | 273 | WP_004736083.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 99 a.a. Molecular weight: 10748.34 Da Isoelectric Point: 4.5702
>NTDB_id=1040104 AB8613_RS03940 WP_372384528.1 875813..876112(-) (comEA) [Vibrio sp. BS-M-Sm-2]
MRTIYSTLLLSFLMLLSPAVFADSPTKAELYDGIEITVNINTATAEELSALLVGVGDKKAQEIVVYREQNGAFTTADDLA
SVKGIGEATVKKNRERIQL
MRTIYSTLLLSFLMLLSPAVFADSPTKAELYDGIEITVNINTATAEELSALLVGVGDKKAQEIVVYREQNGAFTTADDLA
SVKGIGEATVKKNRERIQL
Nucleotide
Download Length: 300 bp
>NTDB_id=1040104 AB8613_RS03940 WP_372384528.1 875813..876112(-) (comEA) [Vibrio sp. BS-M-Sm-2]
ATGCGCACGATATACTCAACATTACTTCTTTCATTTCTGATGCTTTTAAGCCCTGCCGTGTTTGCAGACAGCCCAACCAA
GGCTGAGCTTTACGATGGCATTGAGATTACGGTTAACATCAACACAGCGACAGCAGAGGAGCTATCAGCACTACTGGTTG
GTGTGGGTGACAAAAAAGCCCAAGAGATTGTCGTCTATAGAGAGCAGAACGGTGCGTTTACAACTGCTGATGACTTGGCG
AGTGTGAAAGGGATAGGTGAAGCGACAGTTAAAAAGAACCGCGAAAGAATTCAACTTTGA
ATGCGCACGATATACTCAACATTACTTCTTTCATTTCTGATGCTTTTAAGCCCTGCCGTGTTTGCAGACAGCCCAACCAA
GGCTGAGCTTTACGATGGCATTGAGATTACGGTTAACATCAACACAGCGACAGCAGAGGAGCTATCAGCACTACTGGTTG
GTGTGGGTGACAAAAAAGCCCAAGAGATTGTCGTCTATAGAGAGCAGAACGGTGCGTTTACAACTGCTGATGACTTGGCG
AGTGTGAAAGGGATAGGTGAAGCGACAGTTAAAAAGAACCGCGAAAGAATTCAACTTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae C6706 |
56.701 |
97.98 |
0.556 |
| comEA | Vibrio cholerae strain A1552 |
56.701 |
97.98 |
0.556 |
| comEA | Vibrio campbellii strain DS40M4 |
57.609 |
92.929 |
0.535 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
56.383 |
94.949 |
0.535 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
36.937 |
100 |
0.414 |
| comEA | Acinetobacter baumannii strain A118 |
31.538 |
100 |
0.414 |
| comEA | Acinetobacter baylyi ADP1 |
47.561 |
82.828 |
0.394 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
60 |
60.606 |
0.364 |