Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACCQ12_RS14980 Genome accession   NZ_CP167863
Coordinates   3554360..3555619 (+) Length   419 a.a.
NCBI ID   WP_372383630.1    Uniprot ID   -
Organism   Xanthomonas sp. NCPPB 1068     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3549360..3560619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCQ12_RS14960 (ACCQ12_14960) - 3549411..3550202 (-) 792 WP_372382095.1 glycosyltransferase family 2 protein -
  ACCQ12_RS14965 (ACCQ12_14965) - 3550204..3551394 (-) 1191 WP_372382096.1 glycosyltransferase family 2 protein -
  ACCQ12_RS14970 (ACCQ12_14970) - 3551387..3553471 (-) 2085 WP_372382097.1 hypothetical protein -
  ACCQ12_RS14975 (ACCQ12_14975) pilE 3553544..3553954 (-) 411 WP_249048336.1 pilin Machinery gene
  ACCQ12_RS14980 (ACCQ12_14980) pilC 3554360..3555619 (+) 1260 WP_372383630.1 type II secretion system F family protein Machinery gene
  ACCQ12_RS14985 (ACCQ12_14985) - 3555626..3556489 (+) 864 WP_046343941.1 A24 family peptidase -
  ACCQ12_RS14990 (ACCQ12_14990) coaE 3556503..3557126 (+) 624 WP_372382098.1 dephospho-CoA kinase -
  ACCQ12_RS14995 (ACCQ12_14995) - 3557174..3557382 (+) 209 Protein_2929 SymE family type I addiction module toxin -
  ACCQ12_RS15000 (ACCQ12_15000) - 3557484..3558815 (-) 1332 WP_166744818.1 HAMP domain-containing sensor histidine kinase -
  ACCQ12_RS15005 (ACCQ12_15005) - 3558808..3559485 (-) 678 WP_003490678.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45841.27 Da        Isoelectric Point: 10.1819

>NTDB_id=1039975 ACCQ12_RS14980 WP_372383630.1 3554360..3555619(+) (pilC) [Xanthomonas sp. NCPPB 1068]
MSATRSAIKKQPIDRSTSLVQTFVWEGIDKRGVKMKGEQLAKNANFLRADLRRQGIVPSIVKPKPKPLFGSAGKPIKPKD
IAFFSRQMATMMKSGVPIVGSLEIIGDGQKNPRMKKLVGEIRTDIEGGSSLYESISRHPVQFDELYRNLIRAGEGAGVLE
TVLDTIATYKENLEALKSKIKKALFYPAMVVAVSIIVSAILLIFVVPQFEAVFREFGAELPAFTQMIVAASNVMVSYWWV
MLILSVGSVVGFLFAYKRSPRMQHGMDRVILKVPVIGQIMHNSAVARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQIGLFPHMVVQMTAIGEEAGALDTMLFKVAEYFEQQVNDSVDALSSLLEPMIMVFLGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1039975 ACCQ12_RS14980 WP_372383630.1 3554360..3555619(+) (pilC) [Xanthomonas sp. NCPPB 1068]
ATGTCCGCAACGCGCAGTGCCATCAAAAAACAGCCTATCGACCGCAGCACAAGCTTGGTGCAGACCTTTGTGTGGGAGGG
CATAGACAAACGCGGCGTCAAGATGAAGGGCGAGCAATTGGCAAAGAACGCCAACTTCCTCCGGGCCGATCTACGACGCC
AAGGGATTGTGCCGAGCATCGTTAAGCCCAAGCCAAAACCACTTTTCGGCAGTGCTGGCAAGCCAATCAAACCGAAGGAC
ATCGCGTTCTTCAGCCGCCAGATGGCAACAATGATGAAGTCGGGCGTGCCTATTGTCGGCTCGCTTGAGATCATTGGCGA
TGGACAAAAGAACCCAAGGATGAAAAAGCTGGTCGGGGAAATCCGCACCGACATCGAAGGTGGATCATCCCTATACGAAT
CCATCAGCAGGCACCCGGTCCAGTTCGACGAGCTCTACCGCAACCTGATCCGCGCTGGCGAAGGCGCTGGCGTACTCGAG
ACGGTTCTAGATACAATTGCGACGTACAAGGAAAATCTGGAAGCACTCAAATCCAAGATCAAGAAAGCCTTGTTTTACCC
CGCAATGGTCGTCGCAGTATCGATCATTGTAAGCGCCATCCTATTGATCTTCGTCGTACCCCAGTTCGAGGCCGTGTTCC
GCGAATTCGGCGCCGAATTACCAGCGTTCACGCAGATGATCGTTGCTGCCTCGAATGTAATGGTGTCTTACTGGTGGGTG
ATGCTGATTTTAAGTGTAGGCTCCGTGGTCGGCTTCCTCTTTGCCTATAAGCGATCGCCAAGAATGCAGCATGGCATGGA
CCGGGTGATTTTGAAGGTGCCGGTGATCGGACAGATCATGCATAACAGCGCTGTCGCGCGCTTCGCGCGCACTACGGCCG
TCACCTTTAAAGCTGGTGTCCCATTGGTGGAAGCGCTAGGCATCGTCGCCGGCGCCACTGGCAACAAGGTCTACGAAGAA
GCCGTGCTGCGCATGCGCGATGATGTATCGGTCGGCTACCCGGTCAACATGGCCATGAAGCAGATCGGACTGTTCCCTCA
CATGGTGGTGCAGATGACCGCTATCGGCGAAGAGGCCGGTGCGCTGGACACCATGCTGTTCAAGGTTGCCGAGTATTTCG
AACAACAGGTCAACGATTCTGTGGACGCGTTGAGCAGTCTGCTAGAGCCGATGATCATGGTCTTCCTTGGCACCATCGTC
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.293

94.511

0.513
  pilC Legionella pneumophila strain ERS1305867

50.739

96.897

0.492
  pilC Acinetobacter baylyi ADP1

48.148

96.659

0.465
  pilC Acinetobacter baumannii D1279779

47.16

96.659

0.456
  pilG Neisseria gonorrhoeae MS11

42.394

95.704

0.406
  pilG Neisseria meningitidis 44/76-A

41.895

95.704

0.401
  pilC Vibrio cholerae strain A1552

39.25

95.465

0.375
  pilC Vibrio campbellii strain DS40M4

38.903

95.704

0.372

Multiple sequence alignment