Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   ACCQ03_RS14900 Genome accession   NZ_CP167847
Coordinates   3419863..3420993 (-) Length   376 a.a.
NCBI ID   WP_008571827.1    Uniprot ID   A0A3Q9Q1S7
Organism   Xanthomonas sp. NCPPB 3569     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3414863..3425993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCQ03_RS14880 (ACCQ03_14880) - 3415188..3417020 (+) 1833 WP_057679630.1 DUF4153 domain-containing protein -
  ACCQ03_RS14885 (ACCQ03_14885) - 3417031..3417603 (+) 573 WP_057679629.1 DNA-3-methyladenine glycosylase I -
  ACCQ03_RS14890 (ACCQ03_14890) - 3417611..3418546 (+) 936 WP_170922402.1 DUF72 domain-containing protein -
  ACCQ03_RS14895 (ACCQ03_14895) - 3418713..3419387 (-) 675 WP_016851096.1 YitT family protein -
  ACCQ03_RS14900 (ACCQ03_14900) pilU 3419863..3420993 (-) 1131 WP_008571827.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  ACCQ03_RS14905 (ACCQ03_14905) pilT 3421116..3422153 (-) 1038 WP_003489919.1 type IV pilus twitching motility protein PilT Machinery gene
  ACCQ03_RS14910 (ACCQ03_14910) - 3422571..3423263 (+) 693 WP_057679627.1 YggS family pyridoxal phosphate-dependent enzyme -
  ACCQ03_RS14915 (ACCQ03_14915) proC 3423307..3424161 (+) 855 WP_057679626.1 pyrroline-5-carboxylate reductase -
  ACCQ03_RS14920 (ACCQ03_14920) - 3424725..3425150 (+) 426 WP_017159922.1 HU family DNA-binding protein -
  ACCQ03_RS14925 (ACCQ03_14925) - 3425253..3425894 (+) 642 WP_057679625.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 42014.24 Da        Isoelectric Point: 6.8286

>NTDB_id=1039811 ACCQ03_RS14900 WP_008571827.1 3419863..3420993(-) (pilU) [Xanthomonas sp. NCPPB 3569]
MSTIDFTSFLKLMAHQKASDLFITSGMPPAIKVHGKISPITQTPLTAQQSRDLVLNVMTPSQREEFEKTHECNFAIGVSG
VGRFRVSCFYQRNQVGMVLRRIETRIPTVDELSLPPVIKTLSMTKRGIIIFVGATGTGKSTSLAAMIGYRNQNSTGHIIT
IEDPIEFVHKHEGCIITQREVGIDTDSWENALKNTLRQAPDVIMIGEVRTREGMDHAIAFAETGHLVLCTLHANNANQAM
DRIINFFPEDRRNQLLMDLSLNLKGVVAQQLIPTPDGRGRRVAMEIMLGTPLVQDYIRDGEIHKLKEIMKESTNLGMRTF
DQSLFELYQAGEISYEDALRYADSQNEVRLRIKLSQGGDAKTLSQGLDGVEISEVR

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=1039811 ACCQ03_RS14900 WP_008571827.1 3419863..3420993(-) (pilU) [Xanthomonas sp. NCPPB 3569]
ATGAGCACCATCGACTTCACCTCCTTCCTCAAGCTGATGGCGCATCAGAAGGCGTCGGATCTGTTCATCACCTCGGGGAT
GCCGCCGGCGATCAAGGTGCACGGCAAGATCAGCCCGATCACGCAGACGCCGTTGACCGCGCAGCAGAGCCGCGACCTGG
TGTTGAACGTGATGACGCCGTCGCAGCGCGAGGAATTCGAAAAGACCCACGAGTGCAATTTCGCCATCGGCGTGTCCGGG
GTCGGGCGTTTTCGTGTGAGCTGTTTCTACCAGCGTAACCAGGTGGGCATGGTGCTGCGCCGGATCGAAACGCGCATCCC
CACCGTGGACGAGCTGAGCTTGCCGCCGGTGATCAAGACGCTGTCGATGACCAAGCGCGGCATCATCATCTTCGTCGGCG
CCACCGGGACCGGTAAGTCGACCTCGCTGGCGGCGATGATCGGCTACCGCAACCAGAACTCGACCGGGCACATCATCACC
ATCGAAGACCCGATCGAATTCGTGCACAAGCACGAGGGCTGCATCATTACCCAGCGCGAGGTCGGCATCGATACCGACAG
CTGGGAAAACGCGCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCATGATCGGCGAGGTGCGCACCCGCGAAGGCA
TGGACCATGCGATCGCCTTCGCCGAAACCGGCCACCTGGTGCTGTGCACGCTGCACGCCAACAACGCCAACCAGGCGATG
GACCGCATCATCAACTTCTTCCCCGAGGATCGGCGCAACCAGCTGTTGATGGACCTGTCGCTCAACCTCAAGGGCGTGGT
CGCGCAGCAGCTGATTCCGACCCCGGACGGCCGCGGCCGCCGCGTGGCGATGGAAATCATGCTGGGCACGCCGCTGGTGC
AGGACTACATCCGCGACGGCGAGATCCACAAGCTCAAGGAGATCATGAAGGAGTCCACCAACCTGGGCATGCGCACCTTC
GACCAGAGCCTGTTCGAGCTCTACCAGGCCGGCGAAATCAGCTACGAAGACGCGTTGCGCTACGCCGACTCGCAGAACGA
AGTGCGTCTGCGCATCAAGCTCTCGCAGGGCGGCGATGCCAAGACCTTGTCGCAGGGCCTGGACGGGGTGGAAATTTCCG
AAGTGCGCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(118-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q9Q1S7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

67.03

97.606

0.654
  pilU Acinetobacter baylyi ADP1

63.866

94.947

0.606
  pilU Vibrio cholerae strain A1552

53.09

94.681

0.503
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.737

94.947

0.396
  pilT Pseudomonas aeruginosa PAK

41.194

89.096

0.367
  pilT Acinetobacter nosocomialis M2

40.116

91.489

0.367
  pilT Acinetobacter baumannii D1279779

40.116

91.489

0.367
  pilT Acinetobacter baumannii strain A118

40.116

91.489

0.367

Multiple sequence alignment