Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   ACCQ01_RS15400 Genome accession   NZ_CP167840
Coordinates   3445325..3446455 (-) Length   376 a.a.
NCBI ID   WP_005990431.1    Uniprot ID   Q8P759
Organism   Xanthomonas sp. NCPPB 4037     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3440325..3451455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCQ01_RS15380 (ACCQ01_15380) - 3441435..3441974 (+) 540 WP_228431658.1 DNA-3-methyladenine glycosylase I -
  ACCQ01_RS15385 (ACCQ01_15385) - 3441971..3443233 (+) 1263 WP_228431657.1 hypothetical protein -
  ACCQ01_RS15390 (ACCQ01_15390) - 3443458..3444357 (+) 900 WP_228431656.1 DUF72 domain-containing protein -
  ACCQ01_RS15395 (ACCQ01_15395) - 3444371..3445045 (-) 675 WP_228431819.1 YitT family protein -
  ACCQ01_RS15400 (ACCQ01_15400) pilU 3445325..3446455 (-) 1131 WP_005990431.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  ACCQ01_RS15405 (ACCQ01_15405) pilT 3446578..3447615 (-) 1038 WP_003489919.1 type IV pilus twitching motility protein PilT Machinery gene
  ACCQ01_RS15410 (ACCQ01_15410) - 3447902..3448585 (+) 684 WP_228431655.1 YggS family pyridoxal phosphate-dependent enzyme -
  ACCQ01_RS15415 (ACCQ01_15415) proC 3448626..3449486 (+) 861 WP_228431654.1 pyrroline-5-carboxylate reductase -
  ACCQ01_RS15420 (ACCQ01_15420) - 3450027..3450449 (+) 423 WP_040940938.1 HU family DNA-binding protein -
  ACCQ01_RS15425 (ACCQ01_15425) - 3450593..3451200 (+) 608 Protein_2970 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41996.26 Da        Isoelectric Point: 6.8287

>NTDB_id=1039744 ACCQ01_RS15400 WP_005990431.1 3445325..3446455(-) (pilU) [Xanthomonas sp. NCPPB 4037]
MSTIDFTSFLKLMAHQKASDLFITSGMPPAIKVHGKISPITQTPLTAQQSRDLVLNVMTPSQREEFEKTHECNFAIGVSG
VGRFRVSCFYQRNQVGMVLRRIETRIPTVEELSLPPVIKTLAMTKRGIIIFVGATGTGKSTSLAAMIGYRNQNSTGHIIT
IEDPIEFVHKHEGCIITQREVGIDTDSWENALKNTLRQAPDVIMIGEVRTREGMDHAIAFAETGHLVLCTLHANNANQAM
DRIINFFPEDRRNQLLMDLSLNLKGVVAQQLIPTPDGRGRRVAMEIMLGTPLVQDYIRDGEIHKLKEIMKESTNLGMRTF
DQSLFELYQAGEISYEDALRYADSQNEVRLRIKLSQGGDAKTLSQGLDGVEIAEVR

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=1039744 ACCQ01_RS15400 WP_005990431.1 3445325..3446455(-) (pilU) [Xanthomonas sp. NCPPB 4037]
ATGAGCACCATCGACTTCACCTCCTTCCTCAAGCTGATGGCGCACCAAAAGGCGTCGGACCTGTTCATTACCTCCGGCAT
GCCGCCGGCGATCAAGGTGCACGGCAAGATCAGCCCGATCACGCAGACGCCATTGACCGCGCAGCAGAGCCGCGATCTGG
TGTTGAACGTGATGACGCCGTCGCAGCGCGAAGAGTTCGAAAAGACCCACGAGTGCAACTTCGCCATCGGCGTGTCCGGG
GTCGGGCGTTTCCGTGTCAGCTGTTTCTACCAGCGTAACCAGGTGGGCATGGTGCTGCGCCGGATCGAGACGCGCATTCC
CACGGTGGAAGAGCTGAGCCTGCCGCCGGTGATCAAGACGCTGGCGATGACCAAGCGCGGCATCATCATCTTTGTCGGCG
CCACCGGCACCGGCAAGTCGACCTCGCTGGCGGCGATGATCGGCTACCGCAACCAGAATTCCACCGGGCACATCATCACG
ATCGAAGACCCGATCGAATTCGTGCACAAGCACGAGGGCTGCATCATCACCCAGCGCGAAGTCGGCATTGATACCGATAG
CTGGGAAAATGCGCTGAAAAACACCCTGCGCCAGGCGCCGGACGTGATCATGATCGGCGAAGTGCGGACCCGCGAAGGCA
TGGACCATGCCATCGCCTTCGCCGAAACCGGCCACCTGGTGCTGTGCACGCTGCATGCCAACAACGCCAACCAGGCGATG
GATCGCATCATCAACTTCTTCCCGGAAGATCGCCGCAACCAGCTGCTGATGGACCTGTCGCTCAACCTCAAGGGTGTGGT
GGCGCAGCAGTTGATCCCGACCCCGGATGGCCGCGGCCGCCGCGTGGCGATGGAGATCATGCTGGGCACGCCGCTGGTGC
AGGACTACATCCGCGACGGCGAGATTCACAAGCTCAAGGAGATCATGAAGGAATCCACCAACCTGGGCATGCGCACCTTC
GATCAGAGCCTGTTCGAGCTGTACCAGGCCGGCGAAATCAGCTACGAAGACGCACTGCGCTACGCCGACTCGCAGAACGA
GGTGCGCCTGCGCATCAAGCTCTCGCAAGGCGGCGATGCCAAGACGCTGTCGCAGGGGCTGGATGGCGTGGAGATTGCCG
AGGTTCGGTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(117-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8P759

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

67.575

97.606

0.66
  pilU Acinetobacter baylyi ADP1

63.866

94.947

0.606
  pilU Vibrio cholerae strain A1552

53.652

94.681

0.508
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.017

94.947

0.399
  pilT Acinetobacter baumannii strain A118

40.407

91.489

0.37
  pilT Acinetobacter nosocomialis M2

40.407

91.489

0.37
  pilT Acinetobacter baumannii D1279779

40.407

91.489

0.37
  pilT Pseudomonas aeruginosa PAK

41.194

89.096

0.367

Multiple sequence alignment