Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   ABQY74_RS13915 Genome accession   NZ_CP167821
Coordinates   3237405..3238535 (-) Length   376 a.a.
NCBI ID   WP_016902355.1    Uniprot ID   -
Organism   Xanthomonas sp. WHRI 7064     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3232405..3243535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQY74_RS13885 (ABQY74_013885) - 3232739..3233179 (-) 441 WP_016902361.1 OsmC family protein -
  ABQY74_RS13890 (ABQY74_013890) - 3233453..3234400 (-) 948 WP_039526216.1 aspartate carbamoyltransferase catalytic subunit -
  ABQY74_RS13895 (ABQY74_013895) ruvX 3234416..3234883 (-) 468 WP_349791888.1 Holliday junction resolvase RuvX -
  ABQY74_RS13900 (ABQY74_013900) - 3234876..3235442 (-) 567 WP_011051924.1 YqgE/AlgH family protein -
  ABQY74_RS13905 (ABQY74_013905) - 3235777..3236322 (+) 546 WP_104553954.1 DNA-3-methyladenine glycosylase I -
  ABQY74_RS13910 (ABQY74_013910) - 3236449..3237123 (-) 675 WP_164741848.1 YitT family protein -
  ABQY74_RS13915 (ABQY74_013915) pilU 3237405..3238535 (-) 1131 WP_016902355.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  ABQY74_RS13920 (ABQY74_013920) pilT 3238658..3239695 (-) 1038 WP_003489919.1 type IV pilus twitching motility protein PilT Machinery gene
  ABQY74_RS13925 (ABQY74_013925) - 3240018..3240710 (+) 693 WP_016902354.1 YggS family pyridoxal phosphate-dependent enzyme -
  ABQY74_RS13930 (ABQY74_013930) proC 3240772..3241617 (+) 846 WP_104553953.1 pyrroline-5-carboxylate reductase -
  ABQY74_RS13935 (ABQY74_013935) - 3242218..3242643 (+) 426 WP_026064288.1 HU family DNA-binding protein -
  ABQY74_RS13940 (ABQY74_013940) - 3242779..3243399 (+) 621 WP_127159715.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41966.24 Da        Isoelectric Point: 6.8287

>NTDB_id=1039583 ABQY74_RS13915 WP_016902355.1 3237405..3238535(-) (pilU) [Xanthomonas sp. WHRI 7064]
MSTIDFTSFLKLMAHQKASDLFITSGMPPAIKVHGKISPITQTPLTAQQSRDLVLNVMTPSQREEFEKTHECNFAIGVSG
VGRFRVSCFYQRNQVGMVLRRIETRIPTVEELSLPPVIKTLAMTKRGIIIFVGATGTGKSTSLAAMIGYRNQNSTGHIIT
IEDPIEFVHKHEGCIITQREVGIDTDSWENALKNTLRQAPDVIMIGEVRTREGMDHAVAFAETGHLVLCTLHANNANQAM
DRIINFFPEDRRNQLLMDLSLNLKGVVAQQLIPTPDGRGRRVAMEIMLGTPLVQDYIRDGEIHKLKEIMKESTNLGMRTF
DQSLFELYQAGEISYEDALRYADSQNEVRLRIKLSQGGDAKTLAQGLDGVEIAEVR

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=1039583 ABQY74_RS13915 WP_016902355.1 3237405..3238535(-) (pilU) [Xanthomonas sp. WHRI 7064]
ATGAGCACCATCGACTTCACCTCCTTCCTCAAGCTGATGGCGCACCAGAAGGCGTCGGATCTGTTCATCACCTCGGGGAT
GCCGCCGGCGATCAAGGTGCACGGCAAGATCAGTCCGATCACCCAGACCCCGTTGACCGCGCAACAGAGTCGCGATCTGG
TGTTGAACGTGATGACGCCGTCGCAGCGCGAAGAATTCGAAAAGACCCACGAGTGCAATTTCGCCATCGGCGTGTCCGGG
GTCGGGCGCTTTCGCGTGAGCTGCTTCTACCAGCGCAACCAGGTTGGCATGGTGCTGCGCCGGATCGAAACGCGCATCCC
CACGGTGGAAGAGTTGAGCCTGCCGCCGGTGATCAAGACGCTGGCGATGACCAAGCGCGGCATCATCATCTTCGTCGGCG
CCACCGGCACCGGCAAGTCCACCTCGCTGGCGGCGATGATCGGTTACCGCAACCAGAATTCCACCGGGCACATCATCACC
ATCGAGGACCCGATCGAATTCGTGCACAAGCACGAGGGCTGCATCATCACCCAGCGCGAAGTCGGCATCGATACCGACAG
CTGGGAAAACGCGCTGAAAAACACCCTGCGCCAAGCGCCGGACGTGATCATGATCGGCGAGGTGCGCACCCGCGAAGGCA
TGGATCATGCCGTGGCCTTCGCCGAAACCGGCCATCTGGTGCTGTGCACCCTGCACGCCAACAATGCCAACCAGGCGATG
GACCGCATCATCAACTTCTTCCCGGAAGATCGGCGCAACCAGCTGTTGATGGACCTGTCGCTCAATCTCAAGGGCGTGGT
CGCGCAGCAGTTGATTCCGACCCCGGATGGCCGCGGCCGCCGCGTGGCGATGGAGATCATGCTGGGCACGCCGCTGGTGC
AGGACTACATCCGCGACGGCGAGATCCACAAGCTCAAGGAGATCATGAAGGAGTCCACCAACCTGGGCATGCGCACCTTC
GACCAGAGCCTGTTCGAGCTGTACCAGGCCGGTGAGATCAGCTACGAAGACGCGCTGCGCTACGCCGACTCGCAGAACGA
GGTGCGCCTGCGCATCAAGCTGTCGCAGGGCGGCGACGCCAAGACCCTTGCGCAGGGCCTGGATGGCGTGGAGATCGCCG
AGGTTCGCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(117-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

67.575

97.606

0.66
  pilU Acinetobacter baylyi ADP1

63.866

94.947

0.606
  pilU Vibrio cholerae strain A1552

53.652

94.681

0.508
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.297

94.947

0.402
  pilT Acinetobacter baumannii strain A118

40.407

91.489

0.37
  pilT Acinetobacter nosocomialis M2

40.407

91.489

0.37
  pilT Acinetobacter baumannii D1279779

40.407

91.489

0.37
  pilT Pseudomonas aeruginosa PAK

41.194

89.096

0.367

Multiple sequence alignment