Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABQX42_RS15965 Genome accession   NZ_CP167818
Coordinates   3722426..3723682 (+) Length   418 a.a.
NCBI ID   WP_040107659.1    Uniprot ID   A0AAI7ZHE3
Organism   Xanthomonas citri pv. fuscans strain WHRI 10263     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3717426..3728682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQX42_RS15950 (ABQX42_015960) pilB 3719267..3721003 (-) 1737 WP_089142726.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABQX42_RS15955 (ABQX42_015965) - 3721068..3721523 (-) 456 WP_089095832.1 pilin -
  ABQX42_RS15960 (ABQX42_015970) - 3721633..3722073 (-) 441 WP_015471735.1 pilin -
  ABQX42_RS15965 (ABQX42_015975) pilC 3722426..3723682 (+) 1257 WP_040107659.1 type II secretion system F family protein Machinery gene
  ABQX42_RS15970 (ABQX42_015980) - 3723689..3724552 (+) 864 WP_089095833.1 A24 family peptidase -
  ABQX42_RS15975 (ABQX42_015985) coaE 3724566..3725171 (+) 606 WP_089142030.1 dephospho-CoA kinase -
  ABQX42_RS15980 (ABQX42_015990) - 3725241..3726575 (-) 1335 WP_162808441.1 HAMP domain-containing sensor histidine kinase -
  ABQX42_RS15985 (ABQX42_015995) - 3726568..3727245 (-) 678 WP_003490678.1 response regulator transcription factor -
  ABQX42_RS15990 (ABQX42_016000) - 3727271..3727714 (-) 444 WP_089142031.1 hypothetical protein -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45374.73 Da        Isoelectric Point: 10.2788

>NTDB_id=1039573 ABQX42_RS15965 WP_040107659.1 3722426..3723682(+) (pilC) [Xanthomonas citri pv. fuscans strain WHRI 10263]
MSAARSVVKTKTAASAEQMSPFVWEGTDKRGVKMKGEQTARNANLLRAELRRQGITPLVVKVKPKPLFGAAGKKVSAKDI
SFFSRQMATMMKSGVPIVGALEIIGSGQKNPRMRTMVGQIRTDIEGGASLYEAVSKHPVQFDELYRNLVKAGEGAGVLET
VLDTVATYKENLEALKGKIKKALFYPAMVMAVAMLVSAILLVWVVPQFEDVFKGFGAELPAFTQMIVNLSRFMVSWWWLM
LFALVGAAIGSVFAYKRSPAMQHGMDRLVLKVPIIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNSVYEKA
VLRMREDVSVGYPVNVAMKQVNLFPHMVVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIVG
GMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=1039573 ABQX42_RS15965 WP_040107659.1 3722426..3723682(+) (pilC) [Xanthomonas citri pv. fuscans strain WHRI 10263]
ATGTCAGCAGCACGTAGCGTAGTCAAGACGAAGACCGCCGCATCGGCGGAGCAGATGAGTCCGTTTGTCTGGGAGGGGAC
AGACAAGCGCGGCGTCAAGATGAAAGGCGAACAAACGGCCCGCAATGCAAATCTGCTGCGTGCCGAGTTGCGGCGCCAGG
GCATTACTCCTCTCGTCGTGAAAGTTAAGCCGAAGCCACTATTCGGCGCTGCCGGAAAGAAAGTCTCCGCAAAAGACATT
TCATTTTTCAGCCGACAGATGGCAACCATGATGAAGTCAGGCGTGCCGATTGTCGGCGCGCTTGAGATCATTGGCAGCGG
CCAAAAGAATCCGCGCATGCGCACAATGGTCGGCCAGATCAGGACAGATATCGAAGGCGGAGCATCGCTCTACGAGGCGG
TAAGCAAGCACCCGGTGCAATTTGATGAGCTCTATCGGAATTTGGTCAAGGCAGGCGAAGGCGCAGGCGTACTGGAAACT
GTGCTCGACACCGTCGCCACTTACAAGGAAAACCTTGAAGCCCTAAAAGGCAAGATCAAGAAGGCACTGTTCTACCCTGC
CATGGTAATGGCGGTGGCGATGTTGGTCAGTGCAATCCTGCTTGTTTGGGTGGTCCCTCAATTTGAAGATGTCTTCAAAG
GCTTTGGCGCGGAGTTGCCCGCGTTCACACAGATGATCGTCAATCTGTCTCGCTTTATGGTGTCTTGGTGGTGGCTGATG
CTGTTCGCACTTGTTGGCGCTGCGATTGGGTCTGTTTTCGCATACAAGCGTTCACCAGCGATGCAGCATGGCATGGATCG
TCTGGTGCTGAAGGTGCCGATCATCGGTCAAATCATGCATAACAGTTCTATTGCAAGATTCGCCCGAACAACGGCGGTGA
CCTTTAAGGCCGGCGTACCGCTAGTCGAGGCACTAGGCATCGTGGCCGGTGCTACAGGCAACTCGGTCTATGAAAAAGCA
GTGCTGCGCATGCGCGAAGACGTCTCCGTGGGTTACCCGGTCAACGTCGCGATGAAGCAAGTCAACTTGTTCCCACACAT
GGTGGTGCAGATGACCGCCATCGGCGAAGAAGCCGGTGCACTGGATGCCATGCTGTTCAAGGTGGCTGAGTATTTCGAGC
AGGAAGTCAACAATGCAGTCGATGCGCTCAGCAGCCTGATCGAACCCCTGATCATGGTGTTCATTGGTACCATCGTTGGC
GGCATGGTCATCGGCATGTACCTGCCCATCTTCAAGCTCGCTTCGGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(287-409)

Type II secretion system (T2SS), protein F (T2SSF)

(83-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.086

96.89

0.514
  pilC Acinetobacter baylyi ADP1

51.843

97.368

0.505
  pilC Acinetobacter baumannii D1279779

51.613

96.411

0.498
  pilC Legionella pneumophila strain ERS1305867

52.525

94.737

0.498
  pilG Neisseria meningitidis 44/76-A

42.963

96.89

0.416
  pilG Neisseria gonorrhoeae MS11

42.822

96.651

0.414
  pilC Vibrio cholerae strain A1552

41.814

94.976

0.397
  pilC Vibrio campbellii strain DS40M4

39.95

96.411

0.385

Multiple sequence alignment