Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   ABQX42_RS15950 Genome accession   NZ_CP167818
Coordinates   3719267..3721003 (-) Length   578 a.a.
NCBI ID   WP_089142726.1    Uniprot ID   -
Organism   Xanthomonas citri pv. fuscans strain WHRI 10263     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3714267..3726003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQX42_RS15940 (ABQX42_015950) - 3715481..3717094 (+) 1614 WP_089142029.1 PAS domain-containing sensor histidine kinase -
  ABQX42_RS15945 (ABQX42_015955) pilR 3717364..3718818 (+) 1455 WP_170922314.1 sigma-54 dependent transcriptional regulator Regulator
  ABQX42_RS15950 (ABQX42_015960) pilB 3719267..3721003 (-) 1737 WP_089142726.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABQX42_RS15955 (ABQX42_015965) - 3721068..3721523 (-) 456 WP_089095832.1 pilin -
  ABQX42_RS15960 (ABQX42_015970) - 3721633..3722073 (-) 441 WP_015471735.1 pilin -
  ABQX42_RS15965 (ABQX42_015975) pilC 3722426..3723682 (+) 1257 WP_040107659.1 type II secretion system F family protein Machinery gene
  ABQX42_RS15970 (ABQX42_015980) - 3723689..3724552 (+) 864 WP_089095833.1 A24 family peptidase -
  ABQX42_RS15975 (ABQX42_015985) coaE 3724566..3725171 (+) 606 WP_089142030.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 62542.69 Da        Isoelectric Point: 5.6024

>NTDB_id=1039572 ABQX42_RS15950 WP_089142726.1 3719267..3721003(-) (pilB) [Xanthomonas citri pv. fuscans strain WHRI 10263]
MNSVVTANLVGITGIARRLVQEGAVEEAVARSAMDQASAAKIPLPQWFAEKKLVTASQLAAANAVEFGMPLLDVSAFDAS
QNAVKLVSEELLQKHQVLPLFKRGNRLFVGVSNPTQTRALDDIKFHTNLVVEPILVDEDQIRRTLEQWQASNAALGSALG
DDEEGMGDLDVSAGDEDMGAGGDSGVDAKGDDTPVVKFVNKVLVDAIRRGASDIHFEPYEDDYRVRLRIDGLLKNVAKAP
VKLNQRIAARLKVMSQLDIAEKRVPQDGRIKLNLSKTKQIDFRVSTLPTLFGEKVVLRILDGSAAKLGIDKLGYEADQQK
LFLEAIHKPYGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNNKRGMTFAAALRSFLRQDP
DIIMVGEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCNNCKRKSTLP
DNALLAEGFTPAQLAAGIELYEAVGCDECTEGYKGRTGIYQVMPMTDEIGAIVLEGGNAMQIAEAAQAIGIRDLRQSALM
KAAHGVTSLAEINRVTKD

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=1039572 ABQX42_RS15950 WP_089142726.1 3719267..3721003(-) (pilB) [Xanthomonas citri pv. fuscans strain WHRI 10263]
ATGAATAGCGTCGTGACCGCAAACTTGGTTGGAATAACGGGCATCGCGCGTCGTCTGGTGCAAGAAGGTGCGGTCGAAGA
AGCAGTTGCGCGATCTGCGATGGATCAGGCATCTGCGGCAAAGATTCCTCTACCGCAATGGTTTGCTGAGAAGAAGTTGG
TCACTGCTTCCCAGCTCGCCGCTGCTAATGCGGTCGAGTTCGGCATGCCACTGCTGGATGTGTCGGCGTTCGACGCCAGC
CAAAACGCGGTCAAGCTGGTAAGTGAGGAACTACTTCAGAAGCACCAAGTGCTACCGCTGTTCAAGCGCGGCAACCGGCT
GTTCGTGGGGGTGAGCAATCCGACCCAGACCCGGGCGCTGGATGACATCAAGTTTCACACGAACTTGGTGGTCGAGCCCA
TCCTTGTGGATGAAGATCAGATCCGTCGCACCCTGGAGCAATGGCAGGCCAGCAATGCTGCGCTGGGCTCCGCACTCGGT
GACGACGAGGAGGGCATGGGGGATCTGGACGTTTCGGCTGGCGACGAGGACATGGGCGCCGGCGGGGATTCCGGGGTCGA
TGCCAAGGGCGACGACACGCCGGTGGTGAAGTTCGTCAACAAGGTGCTGGTGGATGCGATCCGGCGGGGAGCGTCGGACA
TCCATTTCGAGCCGTATGAAGACGACTACCGGGTACGCTTGCGCATCGATGGCCTGTTGAAGAACGTGGCCAAGGCGCCG
GTGAAGCTGAACCAGCGCATCGCGGCGCGCTTGAAGGTGATGTCGCAGCTGGATATCGCCGAGAAGCGGGTGCCGCAGGA
CGGGCGCATCAAGCTCAACCTGTCCAAGACCAAGCAGATCGACTTCCGTGTCAGCACCTTGCCGACCCTGTTCGGTGAAA
AAGTGGTGCTGCGTATCCTGGACGGCAGCGCGGCCAAGCTGGGCATCGACAAGCTGGGCTATGAGGCGGACCAGCAGAAG
TTGTTCCTGGAGGCGATCCACAAGCCCTATGGCATGGTGCTGGTGACCGGGCCGACCGGCTCGGGCAAGACGGTGTCGTT
GTATACGGCGCTGGGAATTCTCAACGACGAGACGCGCAATATCTCCACCGCGGAGGACCCGGTCGAAATCCGCTTGCCTG
GCGTCAATCAGGTACAGCAGAACAACAAGCGTGGCATGACCTTCGCGGCAGCCTTGCGCTCGTTCCTGCGACAGGACCCG
GACATCATCATGGTCGGCGAAATCCGTGACCTGGAGACGGCCGAGATTGCGATCAAGGCGGCGCAGACGGGTCACATGGT
GCTGTCGACGTTGCACACCAACGATGCGCCGCAGACCATCGCCCGTTTGATGAACATGGGCATTGCGCCCTACAACATCA
CCTCGTCAGTGACGCTGGTGATTGCGCAGCGTCTGGCGCGGCGGTTGTGCAACAACTGCAAGCGCAAGTCGACGCTGCCT
GACAACGCATTGCTGGCCGAAGGGTTCACGCCTGCACAGCTTGCCGCCGGGATCGAGCTGTATGAGGCGGTCGGTTGCGA
CGAGTGCACCGAAGGCTACAAGGGGCGTACCGGTATCTACCAGGTGATGCCGATGACCGACGAAATCGGCGCGATCGTGC
TGGAGGGCGGCAACGCGATGCAGATCGCCGAGGCCGCGCAGGCGATCGGTATCCGCGATTTGCGGCAGTCGGCGTTGATG
AAGGCTGCGCACGGGGTGACCAGCCTGGCGGAGATCAATCGAGTGACGAAGGACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(49-153)

Type II/IV secretion system protein (T2SSE)

(201-468)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baumannii D1279779

56.69

98.27

0.557
  pilB Acinetobacter baylyi ADP1

55.81

98.27

0.548
  pilB Legionella pneumophila strain ERS1305867

52.197

98.443

0.514
  pilB Vibrio cholerae strain A1552

49.22

99.827

0.491
  pilF Neisseria gonorrhoeae MS11

48.944

98.27

0.481
  pilB Vibrio parahaemolyticus RIMD 2210633

47.143

96.886

0.457
  pilB Vibrio campbellii strain DS40M4

45.694

98.443

0.45

Multiple sequence alignment