Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABQX42_RS15945 Genome accession   NZ_CP167818
Coordinates   3717364..3718818 (+) Length   484 a.a.
NCBI ID   WP_170922314.1    Uniprot ID   -
Organism   Xanthomonas citri pv. fuscans strain WHRI 10263     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3712364..3723818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQX42_RS15920 (ABQX42_015930) - 3712375..3712746 (-) 372 WP_057662468.1 endonuclease domain-containing protein -
  ABQX42_RS15925 (ABQX42_015935) - 3712801..3713051 (-) 251 Protein_3107 hypothetical protein -
  ABQX42_RS15930 (ABQX42_015940) sucD 3713180..3714055 (-) 876 WP_089142027.1 succinate--CoA ligase subunit alpha -
  ABQX42_RS15935 (ABQX42_015945) sucC 3714080..3715249 (-) 1170 WP_089142028.1 ADP-forming succinate--CoA ligase subunit beta -
  ABQX42_RS15940 (ABQX42_015950) - 3715481..3717094 (+) 1614 WP_089142029.1 PAS domain-containing sensor histidine kinase -
  ABQX42_RS15945 (ABQX42_015955) pilR 3717364..3718818 (+) 1455 WP_170922314.1 sigma-54 dependent transcriptional regulator Regulator
  ABQX42_RS15950 (ABQX42_015960) pilB 3719267..3721003 (-) 1737 WP_089142726.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABQX42_RS15955 (ABQX42_015965) - 3721068..3721523 (-) 456 WP_089095832.1 pilin -
  ABQX42_RS15960 (ABQX42_015970) - 3721633..3722073 (-) 441 WP_015471735.1 pilin -
  ABQX42_RS15965 (ABQX42_015975) pilC 3722426..3723682 (+) 1257 WP_040107659.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52479.25 Da        Isoelectric Point: 6.9090

>NTDB_id=1039571 ABQX42_RS15945 WP_170922314.1 3717364..3718818(+) (pilR) [Xanthomonas citri pv. fuscans strain WHRI 10263]
MGHHLLDNCRPSSRWAIVRPMNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIAKHYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASR
LLGDSSAMESLRATISKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRLAAPPGGAAAEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=1039571 ABQX42_RS15945 WP_170922314.1 3717364..3718818(+) (pilR) [Xanthomonas citri pv. fuscans strain WHRI 10263]
TTGGGCCACCACCTGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGTCCCATGAACGAACCCAAAAGCGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCATGGGCCTGCGCATCAGCACTG
CTGCCAACCTGGCCGAAGCGCGCGAGTTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGTTTGCCGGAC
GGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTATCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCACTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGCGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCGCCACCGCCTCCACCGGAACAGGCCAGCCGC
CTGCTCGGGGACTCTAGTGCCATGGAAAGCCTGCGCGCCACCATCAGCAAGGTCGCGCGCAGCCAGGCGCCGGTCTACAT
CGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGAACAAGGCGCACGTGCCGCCGGCCCGTTCG
TACCGGTCAACTGTGGCGCCATTCCCGCCGAACTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCATGGAGGCACGCTGTTTCTGGACGAAGTGGCCGAATTGCCGTT
GCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGCCCGGTCGGCGCATCCAGCGAATCGCTGGTGG
ATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCTTTCGGCATGACCTGTACTAC
CGCATCAACGTGATCGAGTTGCGTGTGCCGCCGCTACGCGAACGCGGTGGCGACCTGCCGCAGCTGGCCGCTGCCATCAT
CGCACGCCTGGCGCACAGCCACGGCCGCCCCATTCCGCTGCTGACCCAATCCGCACTCGACGCATTGAATCACTACGGCT
TCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATCAGCGCTACC
GACCTGCGCCTGCCCGCGCACGGCGGCCACCGTTTGGCCGCCCCCCCAGGAGGCGCCGCGGCCGAACCGCGCGAAGCCGT
GGTCGACATCGACCCCGCCTCGGCCGCGCTGCCGTCCTACATCGAGCAACTGGAACGCGCCGCGATCCAGAAGGCGCTGG
AAGAAAACCGCTGGAACAAGACCAAGACTGCTGCGCAGTTGGGCATCACGTTTCGGGCGCTGCGTTACAAGCTGAAGAAG
CTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(28-134)

Sigma-54 interaction domain (Sigma54_activat)

(162-327)

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

95.661

0.603
  pilR Acinetobacter baumannii strain A118

49.138

95.868

0.471

Multiple sequence alignment