Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACCQ26_RS17005 Genome accession   NZ_CP167239
Coordinates   3911278..3912537 (+) Length   419 a.a.
NCBI ID   WP_043088082.1    Uniprot ID   A0AAQ0W2R1
Organism   Xanthomonas arboricola pv. pruni strain NCPPB 416     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3906278..3917537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCQ26_RS16990 (ACCQ26_16990) pilR 3906948..3908342 (+) 1395 WP_051634076.1 sigma-54 dependent transcriptional regulator Regulator
  ACCQ26_RS16995 (ACCQ26_16995) pilB 3908578..3910311 (-) 1734 WP_039512338.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACCQ26_RS17000 (ACCQ26_17000) - 3910496..3910900 (-) 405 WP_043088084.1 pilin -
  ACCQ26_RS17005 (ACCQ26_17005) pilC 3911278..3912537 (+) 1260 WP_043088082.1 type II secretion system F family protein Machinery gene
  ACCQ26_RS17010 (ACCQ26_17010) - 3912544..3913407 (+) 864 WP_016849610.1 A24 family peptidase -
  ACCQ26_RS17015 (ACCQ26_17015) coaE 3913421..3914044 (+) 624 WP_043088081.1 dephospho-CoA kinase -
  ACCQ26_RS17020 (ACCQ26_17020) - 3914054..3914299 (+) 246 WP_372160084.1 SymE family type I addiction module toxin -
  ACCQ26_RS17025 (ACCQ26_17025) - 3914405..3915739 (-) 1335 WP_016904089.1 HAMP domain-containing sensor histidine kinase -
  ACCQ26_RS17030 (ACCQ26_17030) - 3915732..3916409 (-) 678 WP_006448355.1 response regulator transcription factor -
  ACCQ26_RS17035 (ACCQ26_17035) - 3916510..3916869 (-) 360 WP_223571086.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45795.12 Da        Isoelectric Point: 10.3152

>NTDB_id=1039111 ACCQ26_RS17005 WP_043088082.1 3911278..3912537(+) (pilC) [Xanthomonas arboricola pv. pruni strain NCPPB 416]
MSAIRSAIKKEAVSRSIDQQLQFIWEGKDKRGVKMKGEQTSKSANLLRAELRRQGITPTVVKVKPKPLFGAAGKTVTPKD
IAFFSRQMATMMKSGVPIVGALEIIGSGHKNPRMRNMVGQIRTDIEGGSSLHEAISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVANYKENIEALKGKIKKAMFYPAMVMAVALIVSSILLVWVVPQFEDVFKGFGAELPAFTQMIVNASRFMVAWWWL
LLIVLVGSITGFIFAYKRSPAMQHGMDRLILKAPVLGQIMHNSSIARFARTTAVTFKAGVPLVEALSIVAGATGNSVYEK
AVLRMRDDVSVGYPVNVAMKQVNLFPHMVVQMTSIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPIIMVFIGTIV
GGMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1039111 ACCQ26_RS17005 WP_043088082.1 3911278..3912537(+) (pilC) [Xanthomonas arboricola pv. pruni strain NCPPB 416]
ATGTCAGCAATACGTAGCGCAATCAAGAAAGAGGCCGTGTCCCGCTCAATCGACCAGCAGTTGCAATTCATCTGGGAGGG
TAAGGACAAGCGCGGCGTCAAGATGAAGGGGGAACAGACCTCCAAGAGTGCTAACTTGCTGCGCGCAGAATTGCGTCGCC
AAGGCATCACGCCAACGGTAGTGAAGGTCAAACCCAAGCCGTTATTCGGCGCGGCGGGCAAGACGGTCACACCTAAAGAT
ATCGCTTTTTTCAGCCGTCAAATGGCGACGATGATGAAGTCAGGCGTCCCAATTGTGGGTGCCCTCGAAATTATTGGCAG
TGGCCACAAGAACCCCCGTATGCGGAACATGGTTGGGCAGATCCGCACGGATATTGAGGGGGGCTCCTCGTTGCATGAAG
CAATTAGCAAGCATCCCGTGCAATTTGACGAGCTCTACCGAAATCTCGTCCGTGCAGGCGAAGGCGCGGGCGTACTTGAG
ACCGTTCTTGATACGGTGGCGAATTACAAAGAAAACATCGAAGCACTTAAGGGCAAGATCAAAAAAGCGATGTTCTACCC
GGCAATGGTGATGGCCGTCGCACTGATTGTCAGCTCCATCCTCCTTGTTTGGGTGGTACCCCAATTTGAAGACGTTTTCA
AAGGTTTTGGCGCGGAGCTTCCTGCATTTACACAGATGATCGTCAACGCTTCGCGATTCATGGTTGCGTGGTGGTGGCTC
CTTTTGATTGTATTAGTAGGAAGTATCACTGGCTTTATATTCGCTTATAAACGCTCGCCTGCTATGCAACACGGCATGGA
CCGCCTGATCTTGAAGGCCCCCGTCCTAGGCCAAATAATGCATAACAGCTCGATAGCCCGATTTGCCCGTACGACGGCGG
TGACATTCAAGGCTGGCGTGCCCTTGGTAGAGGCGCTGAGCATCGTTGCAGGTGCGACAGGCAATTCGGTCTATGAGAAG
GCTGTGTTACGTATGCGCGACGACGTTTCAGTCGGCTATCCAGTCAACGTGGCAATGAAACAGGTCAATCTGTTCCCGCA
TATGGTTGTACAGATGACTTCAATCGGTGAGGAGGCCGGCGCATTGGATGCGATGCTATTCAAGGTAGCCGAATACTTCG
AACAAGAAGTCAACAATGCTGTCGATGCATTGAGCAGCTTGCTAGAACCCATCATCATGGTATTCATTGGTACCATCGTC
GGCGGCATGGTCATCGGCATGTACCTGCCCATCTTCAAGCTCGCTTCGGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.535

94.511

0.506
  pilC Legionella pneumophila strain ERS1305867

51.759

94.988

0.492
  pilC Acinetobacter baylyi ADP1

51.385

94.749

0.487
  pilC Acinetobacter baumannii D1279779

51.385

94.749

0.487
  pilG Neisseria gonorrhoeae MS11

43.035

95.943

0.413
  pilG Neisseria meningitidis 44/76-A

42.537

95.943

0.408
  pilC Vibrio cholerae strain A1552

41.206

94.988

0.391
  pilC Vibrio campbellii strain DS40M4

38.916

96.897

0.377

Multiple sequence alignment