Detailed information NTG1039109

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ACCQ26_RS16990
• Genome accession: NZ_CP167239
• Coordinates: 3906948..3908342 (+)
• Length: 464 a.a.
• NCBI ID: WP_051634076.1
• Uniprot ID: A0AAP4NHR5
• Organism: Xanthomonas arboricola pv. pruni strain NCPPB 416
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3901948..3913342

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACCQ26_RS16975 (ACCQ26_16975)	sucD	3902841..3903716 (-)	876	WP_011038208.1	succinate--CoA ligase subunit alpha	-
ACCQ26_RS16980 (ACCQ26_16980)	sucC	3903741..3904910 (-)	1170	WP_016901264.1	ADP-forming succinate--CoA ligase subunit beta	-
ACCQ26_RS16985 (ACCQ26_16985)	-	3905142..3906755 (+)	1614	WP_039512337.1	PAS domain-containing sensor histidine kinase	-
ACCQ26_RS16990 (ACCQ26_16990)	pilR	3906948..3908342 (+)	1395	WP_051634076.1	sigma-54 dependent transcriptional regulator	Regulator
ACCQ26_RS16995 (ACCQ26_16995)	pilB	3908578..3910311 (-)	1734	WP_039512338.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACCQ26_RS17000 (ACCQ26_17000)	-	3910496..3910900 (-)	405	WP_043088084.1	pilin	-
ACCQ26_RS17005 (ACCQ26_17005)	pilC	3911278..3912537 (+)	1260	WP_043088082.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 464 a.a.
• Molecular weight: 50118.51 Da
• Isoelectric Point: 6.5112

>NTDB_id=1039109 ACCQ26_RS16990 WP_051634076.1 3906948..3908342(+) (pilR) [Xanthomonas arboricola pv. pruni strain NCPPB 416]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPAPPPEQASRLLGDSGAMEGLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKNLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALDQYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAATPGSAA
VEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1395 bp

>NTDB_id=1039109 ACCQ26_RS16990 WP_051634076.1 3906948..3908342(+) (pilR) [Xanthomonas arboricola pv. pruni strain NCPPB 416]
ATGAACGAACCGAAAAGTGCCCTGGTTGTCGATGACGAGCGTGACATTCGCGAACTGCTTGTTCTCACCCTGGGCCGGAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAACAATCCCTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTCACCGAAATCGCCAAGCACTATCCGCAGACCCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCCTTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCCGCCCCGCCCGCGCCGC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGACTCCGGCGCGATGGAAGGCCTGCGCGCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCCCGCACCATCCACGAGCAAGGCGC
ACGCGCGGCCGGTCCATTTGTGCCGGTCAACTGCGGCGCCATCCCCGCCGAACTGATGGAAAGCGAATTCTTCGGCCACA
AGAAGGGCAGTTTCACCGGCGCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAGGTGGCCGAATTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTGGGCGC
TTCCAGCGAGTCGCTGGTGGACGTGCGCATTCTCTCGGCCACCCACAAAAACCTGGGCGACCTGGTCTCCGACGGCCGTT
TCCGCCACGACCTGTACTACCGCATCAACGTCATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCCATCATCGCGCGCCTGGCGCATAGCCACGGCCGGCCGATTCCGCTGCTGACCCAGTCCGCGCTCGA
CGCGCTGGACCAGTACGGCTTCCCGGGCAATGTGCGCGAGCTGGAAAATATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGCGGCCATCGCCTGGCCGCCACACCCGGCAGCGCCGCC
GTCGAACCCCGCGAAGCAGTGGTCGACATCGACCCCGCCTCGGCCGCCCTGCCTTCCTACATCGAGCAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGCTGGGCATCACGTTTCGGGCGT
TGCGTTACAAGTTGAAGAAGTTGGGGATGGAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (421-461)

• Response regulator receiver domain (Response_reg) (8-115)

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.261	99.138	0.627
pilR	Acinetobacter baumannii strain A118	48.922	100	0.489