Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   ACCP88_RS14555 Genome accession   NZ_CP167212
Coordinates   3327173..3328303 (-) Length   376 a.a.
NCBI ID   WP_008571827.1    Uniprot ID   A0A3Q9Q1S7
Organism   Xanthomonas axonopodis pv. cyamopsidis strain NCPPB 3758     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3322173..3333303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCP88_RS14525 (ACCP88_14550) ruvX 3322699..3323166 (-) 468 WP_372160999.1 Holliday junction resolvase RuvX -
  ACCP88_RS14530 (ACCP88_14555) - 3323159..3323725 (-) 567 WP_372161001.1 YqgE/AlgH family protein -
  ACCP88_RS14535 (ACCP88_14560) - 3324002..3324574 (+) 573 WP_372161003.1 DNA-3-methyladenine glycosylase I -
  ACCP88_RS14540 (ACCP88_14565) - 3324582..3325508 (+) 927 WP_372161005.1 DUF72 domain-containing protein -
  ACCP88_RS14545 (ACCP88_14570) - 3325792..3326043 (+) 252 WP_162010796.1 hypothetical protein -
  ACCP88_RS14550 (ACCP88_14575) - 3326079..3327083 (+) 1005 WP_005926112.1 pectate lyase -
  ACCP88_RS14555 (ACCP88_14580) pilU 3327173..3328303 (-) 1131 WP_008571827.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  ACCP88_RS14560 (ACCP88_14585) - 3328416..3329453 (-) 1038 Protein_2836 type IV pilus twitching motility protein PilT -
  ACCP88_RS14565 (ACCP88_14590) - 3329871..3330563 (+) 693 WP_008571828.1 YggS family pyridoxal phosphate-dependent enzyme -
  ACCP88_RS14570 (ACCP88_14595) proC 3330607..3331461 (+) 855 WP_218502143.1 pyrroline-5-carboxylate reductase -
  ACCP88_RS14575 (ACCP88_14600) - 3332021..3332446 (+) 426 WP_008571830.1 HU family DNA-binding protein -
  ACCP88_RS14580 (ACCP88_14605) - 3332552..3333193 (+) 642 WP_014090668.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 42014.24 Da        Isoelectric Point: 6.8286

>NTDB_id=1038892 ACCP88_RS14555 WP_008571827.1 3327173..3328303(-) (pilU) [Xanthomonas axonopodis pv. cyamopsidis strain NCPPB 3758]
MSTIDFTSFLKLMAHQKASDLFITSGMPPAIKVHGKISPITQTPLTAQQSRDLVLNVMTPSQREEFEKTHECNFAIGVSG
VGRFRVSCFYQRNQVGMVLRRIETRIPTVDELSLPPVIKTLSMTKRGIIIFVGATGTGKSTSLAAMIGYRNQNSTGHIIT
IEDPIEFVHKHEGCIITQREVGIDTDSWENALKNTLRQAPDVIMIGEVRTREGMDHAIAFAETGHLVLCTLHANNANQAM
DRIINFFPEDRRNQLLMDLSLNLKGVVAQQLIPTPDGRGRRVAMEIMLGTPLVQDYIRDGEIHKLKEIMKESTNLGMRTF
DQSLFELYQAGEISYEDALRYADSQNEVRLRIKLSQGGDAKTLSQGLDGVEISEVR

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=1038892 ACCP88_RS14555 WP_008571827.1 3327173..3328303(-) (pilU) [Xanthomonas axonopodis pv. cyamopsidis strain NCPPB 3758]
ATGAGCACCATCGACTTCACCTCCTTCCTCAAGCTGATGGCGCATCAGAAGGCCTCGGACCTGTTCATCACCTCGGGCAT
GCCGCCGGCGATCAAGGTGCACGGCAAGATCAGCCCGATTACCCAGACCCCGCTGACTGCGCAGCAGAGCCGCGACCTGG
TGTTGAACGTGATGACGCCGTCGCAGCGCGAGGAATTCGAAAAGACCCACGAGTGCAATTTCGCCATCGGCGTATCCGGG
GTCGGGCGTTTCCGTGTGAGCTGCTTCTACCAGCGTAATCAGGTGGGCATGGTGCTGCGCCGGATCGAAACGCGCATCCC
CACCGTGGACGAGCTGAGCTTGCCGCCGGTGATCAAGACGCTGTCGATGACCAAGCGCGGCATCATCATCTTCGTCGGCG
CCACCGGAACCGGTAAATCGACTTCGCTGGCGGCGATGATCGGCTACCGCAACCAGAATTCCACCGGGCACATCATCACC
ATCGAAGACCCGATCGAATTCGTGCACAAGCACGAGGGCTGCATCATCACCCAGCGCGAGGTCGGCATCGACACCGACAG
CTGGGAAAATGCGCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCATGATCGGCGAGGTGCGCACCCGCGAAGGCA
TGGACCATGCGATCGCCTTCGCCGAAACCGGCCACCTGGTGCTGTGCACGCTGCACGCCAACAACGCCAACCAGGCGATG
GACCGCATCATCAACTTCTTCCCAGAGGATCGGCGCAACCAGCTGTTGATGGACCTGTCGCTCAACCTCAAGGGCGTGGT
CGCGCAGCAGCTGATTCCGACCCCGGACGGCCGCGGCCGACGCGTGGCGATGGAAATCATGCTGGGCACGCCGCTGGTGC
AGGACTACATCCGCGATGGCGAGATCCACAAGCTCAAGGAGATCATGAAGGAGTCCACCAACCTGGGCATGCGCACCTTC
GACCAGAGCCTGTTCGAGCTCTACCAGGCCGGCGAAATCAGTTACGAAGATGCGCTGCGCTACGCCGACTCGCAGAACGA
AGTACGCCTGCGCATCAAGCTCTCGCAGGGTGGCGATGCCAAGACCCTGTCGCAGGGCCTGGACGGCGTGGAAATTTCCG
AAGTGCGCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(118-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q9Q1S7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

67.03

97.606

0.654
  pilU Acinetobacter baylyi ADP1

63.866

94.947

0.606
  pilU Vibrio cholerae strain A1552

53.09

94.681

0.503
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.737

94.947

0.396
  pilT Pseudomonas aeruginosa PAK

41.194

89.096

0.367
  pilT Acinetobacter nosocomialis M2

40.116

91.489

0.367
  pilT Acinetobacter baumannii D1279779

40.116

91.489

0.367
  pilT Acinetobacter baumannii strain A118

40.116

91.489

0.367

Multiple sequence alignment