Detailed information NTG1038865

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: ACCP91_RS05595
• Genome accession: NZ_CP167209
• Coordinates: 1227659..1228861 (-)
• Length: 400 a.a.
• NCBI ID: WP_277573766.1
• Uniprot ID: -
• Organism: Xanthomonas axonopodis pv. cyamopsidis strain NCPPB 637
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	1225263..1234729	1227659..1228861	within	0

Gene organization within MGE regions

Location: 1225263..1234729

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACCP91_RS05585 (ACCP91_05585)	coaE	1226134..1226775 (-)	642	WP_372162898.1	dephospho-CoA kinase	-
ACCP91_RS05590 (ACCP91_05590)	-	1226789..1227652 (-)	864	WP_008576868.1	A24 family peptidase	-
ACCP91_RS05595 (ACCP91_05595)	pilC	1227659..1228861 (-)	1203	WP_277573766.1	type II secretion system F family protein	Machinery gene
ACCP91_RS05600 (ACCP91_05600)	-	1229043..1231034 (-)	1992	WP_277573652.1	hypothetical protein	-
ACCP91_RS05605 (ACCP91_05605)	-	1231104..1231520 (-)	417	WP_372162900.1	pilin	-
ACCP91_RS05610 (ACCP91_05610)	-	1231571..1231867 (+)	297	WP_372162902.1	hypothetical protein	-
ACCP91_RS05615 (ACCP91_05615)	-	1231897..1232247 (+)	351	WP_372162904.1	SMR family transporter	-
ACCP91_RS05620 (ACCP91_05620)	-	1232252..1233046 (+)	795	WP_277573650.1	glycosyltransferase	-
ACCP91_RS05625 (ACCP91_05625)	-	1233061..1234089 (+)	1029	WP_372162906.1	glycosyltransferase	-
ACCP91_RS05630 (ACCP91_05630)	-	1234082..1234729 (+)	648	WP_277573648.1	methionine biosynthesis protein MetW	-

Sequence

Protein

• Length: 400 a.a.
• Molecular weight: 43708.01 Da
• Isoelectric Point: 10.0366

>NTDB_id=1038865 ACCP91_RS05595 WP_277573766.1 1227659..1228861(-) (pilC) [Xanthomonas axonopodis pv. cyamopsidis strain NCPPB 637]
MATFVWEGTDKRGVKMKGDELARNANMLRAELRRRGITPTVVKTKPKPLFGAAGKPIKPKDIAFFSRQMATMMKSGVPIV
GSLEIIGEGAKNPRMKKMVGEIRTDIEGGLSLNEAISKHPVQFDELYRNLVKAGESAGVLDTVLETVATYKENIEALKGK
IKKALFYPAMVMAVALIVSSILLIWVVPQFETVFSSFGAELPAFTQMIVNCSRFMVSWWLPMLLVAIGSAVGLVMGYKRS
PKMQHLFDRLILKVPVIGKIMHDSAIARFARTTAVTFKAGVPLVEALSIVAGATGNKVYEEAVLRMRDDVSVGYPVNLSM
KQVNLFPHMVIQMTAIGEEAGALDTMLFKVADYFEQDVNNAVDALSSLLEPMIMIFIGVVVGGMVIGMYLPIFKLGAVVG

Nucleotide

• Length: 1203 bp

>NTDB_id=1038865 ACCP91_RS05595 WP_277573766.1 1227659..1228861(-) (pilC) [Xanthomonas axonopodis pv. cyamopsidis strain NCPPB 637]
ATGGCGACCTTTGTCTGGGAGGGAACAGACAAGCGCGGCGTCAAGATGAAGGGGGATGAGCTCGCCCGCAATGCCAACAT
GCTGCGTGCCGAACTCCGGCGACGCGGCATTACGCCGACCGTGGTCAAGACCAAGCCCAAGCCGTTGTTCGGCGCAGCCG
GCAAGCCAATCAAGCCCAAGGACATCGCGTTCTTCAGTCGGCAGATGGCTACCATGATGAAATCGGGCGTACCGATTGTG
GGGTCGCTCGAAATCATCGGAGAGGGCGCCAAGAACCCGCGCATGAAGAAGATGGTCGGCGAAATCCGCACCGACATCGA
GGGCGGCCTGTCGCTCAACGAGGCGATCAGCAAGCATCCGGTGCAATTCGACGAGCTGTACCGCAACCTGGTCAAAGCAG
GCGAAAGTGCAGGCGTTCTCGATACTGTGCTAGAAACGGTAGCGACGTATAAAGAAAACATCGAAGCCCTGAAGGGCAAG
ATCAAGAAGGCCCTGTTCTATCCGGCGATGGTGATGGCCGTTGCGCTGATCGTCAGTTCCATCCTGCTCATCTGGGTGGT
ACCGCAATTCGAAACCGTCTTCTCCAGCTTTGGCGCGGAGTTGCCTGCGTTTACCCAGATGATCGTGAATTGTTCACGTT
TCATGGTGTCGTGGTGGCTGCCGATGTTGCTGGTCGCAATCGGCTCGGCCGTCGGGCTAGTGATGGGCTACAAGCGCTCG
CCGAAAATGCAGCATTTGTTCGACCGGCTGATCTTGAAGGTGCCGGTCATCGGCAAGATCATGCACGACAGTGCCATTGC
CCGGTTCGCGCGCACCACGGCGGTGACCTTCAAGGCTGGTGTTCCGCTTGTGGAGGCGCTGAGCATCGTGGCCGGCGCTA
CCGGCAACAAAGTCTATGAAGAAGCGGTGTTGCGCATGCGCGACGACGTATCGGTCGGCTATCCGGTCAACCTGTCGATG
AAGCAGGTCAACCTGTTTCCGCACATGGTGATCCAAATGACGGCCATCGGTGAGGAGGCAGGCGCATTGGATACCATGTT
ATTCAAAGTTGCCGATTACTTCGAGCAAGACGTGAACAATGCAGTGGATGCCTTGAGCAGCCTGCTGGAGCCGATGATCA
TGATCTTCATTGGTGTCGTTGTCGGCGGCATGGTGATCGGCATGTACCTGCCCATCTTCAAGTTGGGCGCAGTGGTTGGA
TAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (269-391)

• Type II secretion system (T2SS), protein F (T2SSF) (65-188)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	53.015	99.5	0.527
pilC	Legionella pneumophila strain ERS1305867	51.889	99.25	0.515
pilC	Acinetobacter baylyi ADP1	49.875	100	0.5
pilC	Acinetobacter baumannii D1279779	48.5	100	0.485
pilG	Neisseria gonorrhoeae MS11	43.035	100	0.433
pilG	Neisseria meningitidis 44/76-A	42.928	100	0.432
pilC	Vibrio campbellii strain DS40M4	40.05	100	0.403
pilC	Vibrio cholerae strain A1552	39.5	100	0.395
pilC	Thermus thermophilus HB27	38.653	100	0.387