Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACBZ91_RS09900 Genome accession   NZ_CP167179
Coordinates   2142210..2143433 (+) Length   407 a.a.
NCBI ID   WP_372377300.1    Uniprot ID   -
Organism   Vibrio natriegens strain JSH01     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2137210..2148433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACBZ91_RS09880 (ACBZ91_09880) ampD 2138272..2138817 (-) 546 WP_065302862.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  ACBZ91_RS09885 (ACBZ91_09885) nadC 2138910..2139797 (+) 888 WP_372377297.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACBZ91_RS09890 (ACBZ91_09890) - 2140054..2140491 (+) 438 WP_372377298.1 pilin -
  ACBZ91_RS09895 (ACBZ91_09895) pilB 2140494..2142179 (+) 1686 WP_372377299.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACBZ91_RS09900 (ACBZ91_09900) pilC 2142210..2143433 (+) 1224 WP_372377300.1 type II secretion system F family protein Machinery gene
  ACBZ91_RS09905 (ACBZ91_09905) pilD 2143501..2144370 (+) 870 WP_372377301.1 A24 family peptidase Machinery gene
  ACBZ91_RS09910 (ACBZ91_09910) coaE 2144371..2145015 (+) 645 WP_372377302.1 dephospho-CoA kinase -
  ACBZ91_RS09915 (ACBZ91_09915) zapD 2145012..2145752 (+) 741 WP_014232955.1 cell division protein ZapD -
  ACBZ91_RS09920 (ACBZ91_09920) yacG 2145826..2146020 (+) 195 WP_014232956.1 DNA gyrase inhibitor YacG -
  ACBZ91_RS09925 (ACBZ91_09925) rplS 2146346..2146699 (-) 354 WP_005379971.1 50S ribosomal protein L19 -
  ACBZ91_RS09930 (ACBZ91_09930) trmD 2146740..2147501 (-) 762 WP_014232957.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ACBZ91_RS09935 (ACBZ91_09935) rimM 2147529..2148077 (-) 549 WP_014232958.1 ribosome maturation factor RimM -
  ACBZ91_RS09940 (ACBZ91_09940) rpsP 2148108..2148356 (-) 249 WP_005379962.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45080.36 Da        Isoelectric Point: 10.3501

>NTDB_id=1038682 ACBZ91_RS09900 WP_372377300.1 2142210..2143433(+) (pilC) [Vibrio natriegens strain JSH01]
MKTTTPQLKNFRWKGINSSGKKTSGKTLAMSEVEVRERLNAQHIKIKKLKKSSISFLTKLSHRVKGKDITVFTRQISTML
ITGVPLVQALKLVSNNHKKAEMKSILMSVTRAVEAGTPMSKAMRTASAHFDALYTDLISTGELSGNLAEVFERLATYREK
SEELRAKVIKALIYPAMVMLVALGVSYLMLTQVIPEFEKMFSGFGADLPWFTRQVLDLSAWMQNWGSFIALGTLSLIISA
RILVKRSDSFRLMMDRAILKIPVLGAVLSKAAIAKFSRTLATSFSAGIPILTSLKTTSKTSGNLHYQLAVEEVYRDTAAG
MPMYVAMRNCDVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGVVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=1038682 ACBZ91_RS09900 WP_372377300.1 2142210..2143433(+) (pilC) [Vibrio natriegens strain JSH01]
ATGAAAACGACGACCCCACAACTCAAGAACTTCCGCTGGAAAGGCATTAATAGCTCAGGAAAAAAGACCTCTGGGAAAAC
GCTGGCCATGAGCGAAGTGGAAGTACGCGAACGACTCAACGCCCAGCACATAAAAATCAAAAAGCTCAAAAAAAGCAGTA
TTTCTTTTTTAACCAAACTGAGTCATCGCGTAAAAGGCAAAGACATCACCGTTTTCACTCGACAAATCTCTACCATGCTT
ATTACAGGCGTCCCACTCGTTCAGGCTTTGAAACTGGTCTCCAATAATCATAAAAAAGCCGAGATGAAGTCAATTTTAAT
GAGCGTAACTCGAGCGGTTGAAGCGGGTACGCCGATGTCAAAAGCAATGCGCACCGCCAGCGCACATTTTGACGCACTTT
ATACTGACCTTATCTCAACCGGAGAACTCTCAGGCAATCTGGCAGAAGTCTTTGAACGACTGGCCACTTATCGTGAAAAA
AGTGAGGAACTCAGAGCGAAAGTCATCAAGGCCCTGATCTACCCTGCCATGGTTATGTTGGTTGCGCTCGGCGTGTCCTA
TCTCATGCTTACTCAAGTTATCCCTGAGTTTGAAAAAATGTTTTCTGGGTTTGGTGCAGATTTACCTTGGTTCACCAGAC
AAGTACTAGACTTGTCTGCGTGGATGCAAAATTGGGGTTCATTTATCGCTCTTGGGACACTTAGCCTAATTATATCAGCA
AGAATACTGGTCAAACGTTCTGATTCTTTTCGCTTGATGATGGATCGAGCCATATTGAAAATTCCCGTTCTTGGCGCTGT
GTTGTCCAAGGCTGCGATTGCTAAATTTAGCCGAACCCTGGCCACCAGCTTCAGTGCTGGTATTCCTATTCTGACCAGTT
TAAAAACCACCTCCAAAACGTCAGGAAATCTGCACTATCAGCTGGCAGTAGAAGAGGTCTATCGTGATACAGCCGCTGGT
ATGCCAATGTATGTCGCGATGCGTAACTGCGATGTTTTCCCTGAATTGGTGCTACAAATGGTGATGATTGGAGAAGAGTC
GGGGCGGCTTGACGATATGCTCAATAAAGTCGCAACTATTTATGAGTTCGAAGTAGATAACACCGTCGATAACCTAAGTA
AGATTCTTGAACCGCTGATTATTGTTTTTCTTGGTGTGGTCGTTGGTGGACTAGTGACAGCAATGTACCTGCCAATCTTT
AACTTAATGAGTGTATTAGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

85.504

100

0.855
  pilC Vibrio cholerae strain A1552

73.827

99.509

0.735
  pilC Legionella pneumophila strain ERS1305867

41.032

100

0.41
  pilC Acinetobacter baumannii D1279779

41.089

99.263

0.408
  pilC Acinetobacter baylyi ADP1

41.25

98.28

0.405
  pilC Pseudomonas stutzeri DSM 10701

40.404

97.297

0.393
  pilG Neisseria gonorrhoeae MS11

39.303

98.771

0.388
  pilG Neisseria meningitidis 44/76-A

39.055

98.771

0.386

Multiple sequence alignment