Detailed information NTG1038260

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: AB9L18_RS04395
• Genome accession: NZ_CP167120
• Coordinates: 963624..964883 (-)
• Length: 419 a.a.
• NCBI ID: WP_375069529.1
• Uniprot ID: -
• Organism: Stenotrophomonas lactitubi strain RW9
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	956646..964883	963624..964883	within	0

Gene organization within MGE regions

Location: 956646..964883

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB9L18_RS04350 (AB9L18_04350)	-	956646..956888 (+)	243	WP_180165749.1	hypothetical protein	-
AB9L18_RS04355 (AB9L18_04355)	rimK	956983..957861 (+)	879	WP_100553389.1	30S ribosomal protein S6--L-glutamate ligase	-
AB9L18_RS04360 (AB9L18_04360)	-	958115..958591 (+)	477	WP_180165747.1	hypothetical protein	-
AB9L18_RS04365 (AB9L18_04365)	-	958681..959154 (+)	474	WP_180165745.1	hypothetical protein	-
AB9L18_RS04370 (AB9L18_04370)	-	959163..959840 (+)	678	WP_025874286.1	response regulator transcription factor	-
AB9L18_RS04375 (AB9L18_04375)	-	959803..961173 (+)	1371	WP_375069523.1	sensor histidine kinase	-
AB9L18_RS04380 (AB9L18_04380)	-	961690..962076 (+)	387	WP_375069525.1	hypothetical protein	-
AB9L18_RS04385 (AB9L18_04385)	coaE	962129..962740 (-)	612	WP_375069527.1	dephospho-CoA kinase	-
AB9L18_RS04390 (AB9L18_04390)	-	962752..963615 (-)	864	WP_025874291.1	A24 family peptidase	-
AB9L18_RS04395 (AB9L18_04395)	pilC	963624..964883 (-)	1260	WP_375069529.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 419 a.a.
• Molecular weight: 45678.21 Da
• Isoelectric Point: 10.1539

>NTDB_id=1038260 AB9L18_RS04395 WP_375069529.1 963624..964883(-) (pilC) [Stenotrophomonas lactitubi strain RW9]
MSVSRSAIKKEPVARATMELQPFVWQGTDKRGIKMKGEQLAKNANLLRAELRRQGINPGQIRPKPKPLFGAAGKAVGAKD
IAFFSRQMATMMKSGVPIVSALEIIGSGHKNPRMKKMVDGIRTDIEGGSSLHEAVSKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIESLKGKIKKALFYPATVVAVALLVSAIMLIFVVPQFEEVFQGFGAELPAFTQMIVNLSRFMVSWWWL
MAIVLVGACVALVMSYKRSLKMQHTMDRLILKVPVIGPIMNNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQLNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLLEPMIMVFIGVVV
GGMVIGMYLPIFKLGAVVG

Nucleotide

• Length: 1260 bp

>NTDB_id=1038260 AB9L18_RS04395 WP_375069529.1 963624..964883(-) (pilC) [Stenotrophomonas lactitubi strain RW9]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAAGAGCCCGTGGCCCGTGCCACGATGGAGTTGCAGCCGTTTGTCTGGCAGGG
GACCGACAAGCGAGGCATCAAAATGAAGGGCGAGCAGTTGGCGAAGAACGCCAATCTGCTGCGTGCCGAGCTACGCCGGC
AAGGCATCAACCCTGGTCAGATTAGGCCTAAGCCGAAGCCGCTGTTCGGCGCGGCAGGTAAAGCCGTCGGCGCAAAGGAC
ATCGCCTTCTTCAGTCGGCAAATGGCGACGATGATGAAATCCGGTGTGCCGATCGTCTCGGCCTTGGAGATCATCGGCAG
CGGGCACAAGAACCCGCGCATGAAGAAGATGGTCGATGGCATTCGTACTGACATCGAGGGAGGATCCTCGCTGCACGAGG
CGGTCAGCAAGCATCCTGTGCAGTTTGACGAGTTGTACCGCAACTTGGTACGCGCTGGTGAAGGCGCAGGTGTGCTCGAA
ACGGTCTTGGACACTGTCGCTACGTACAAAGAGAATATCGAATCCCTGAAGGGCAAGATTAAGAAAGCCTTATTTTACCC
AGCAACCGTGGTGGCGGTCGCCCTTCTCGTCAGCGCCATCATGCTGATCTTCGTGGTACCTCAGTTCGAAGAGGTTTTCC
AGGGCTTTGGCGCTGAGCTCCCGGCTTTCACTCAGATGATCGTCAACCTGTCCAGGTTCATGGTGTCCTGGTGGTGGCTG
ATGGCCATCGTTCTGGTCGGTGCGTGTGTGGCTTTGGTCATGAGCTACAAACGCTCACTGAAAATGCAACACACGATGGA
TCGACTGATCCTCAAAGTCCCGGTCATCGGCCCGATCATGAACAACAGCGCCATTGCCCGTTTTGCCCGCACTACAGCGG
TGACCTTCAAGGCCGGCGTGCCGTTGGTCGAAGCGCTGGGTATCGTCGCCGGCGCGACTGGCAACAAGGTCTATGAGGAA
GCCGTGCTGCGCATGCGTGATGATGTATCAGTCGGCTACCCAGTCAACATGGCGATGAAACAGCTCAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGCGAAGAGGCCGGCGCCCTGGATGCCATGTTGTTCAAGGTTGCCGAGTATTATG
AGCAGGAAGTCAACAATGCAGTGGATGCCCTGAGCAGCCTGCTCGAACCGATGATCATGGTCTTCATCGGCGTCGTCGTA
GGCGGTATGGTCATCGGCATGTACCTGCCCATCTTCAAACTCGGCGCCGTCGTCGGCTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (84-207)

• Type II secretion system (T2SS), protein F (T2SSF) (288-410)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	53.535	94.511	0.506
pilC	Legionella pneumophila strain ERS1305867	52.632	95.227	0.501
pilC	Acinetobacter baumannii D1279779	50.369	97.136	0.489
pilC	Acinetobacter baylyi ADP1	50	96.897	0.484
pilG	Neisseria gonorrhoeae MS11	44.724	94.988	0.425
pilG	Neisseria meningitidis 44/76-A	44.361	95.227	0.422
pilC	Vibrio cholerae strain A1552	41.626	96.897	0.403
pilC	Vibrio campbellii strain DS40M4	41.397	95.704	0.396
pilC	Thermus thermophilus HB27	37.562	95.943	0.36