Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | AB9V61_RS03825 | Genome accession | NZ_CP166925 |
| Coordinates | 875238..876455 (-) | Length | 405 a.a. |
| NCBI ID | WP_011167727.1 | Uniprot ID | Q48NC0 |
| Organism | Pseudomonas savastanoi pv. phaseolicola strain HB10Y | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 870238..881455
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB9V61_RS03810 (AB9V61_03810) | yacG | 873538..873747 (-) | 210 | WP_007251656.1 | DNA gyrase inhibitor YacG | - |
| AB9V61_RS03815 (AB9V61_03815) | coaE | 873744..874367 (-) | 624 | WP_011167725.1 | dephospho-CoA kinase | - |
| AB9V61_RS03820 (AB9V61_03820) | pilD | 874364..875236 (-) | 873 | WP_011167726.1 | A24 family peptidase | Machinery gene |
| AB9V61_RS03825 (AB9V61_03825) | pilC | 875238..876455 (-) | 1218 | WP_011167727.1 | type II secretion system F family protein | Machinery gene |
| AB9V61_RS03830 (AB9V61_03830) | pilB | 876458..878152 (-) | 1695 | WP_011167728.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| AB9V61_RS03835 (AB9V61_03835) | - | 878377..878772 (+) | 396 | WP_011167729.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| AB9V61_RS03840 (AB9V61_03840) | - | 879337..880596 (+) | 1260 | WP_004663377.1 | IS256-like element ISPsy17 family transposase | - |
Sequence
Protein
Download Length: 405 a.a. Molecular weight: 44043.98 Da Isoelectric Point: 10.0788
>NTDB_id=1036284 AB9V61_RS03825 WP_011167727.1 875238..876455(-) (pilC) [Pseudomonas savastanoi pv. phaseolicola strain HB10Y]
MASKAVKVSVYTWEGVDKKGGKLSGEVSGHNLALVKAQLRKQGINFTKVRKKPVSIFGKGKKIKPLDIAFFSRQMATMMK
AGVPLLQSFDIIAEGAENPNMRALVGSLKQEVSAGNSFATALRQKPEYFDDLFCNLVDAGEQAGALESLLDRIASYKEKT
EKLKAKIKKAMTYPIAVLIVAIIVSGILLIKVVPQFQSVFAGFGAELPAFTLMVIGLSDIVQKWWLAIVGLFFVGAFLFK
RAYKQSEKFRDNIDRFLLKVPIIGPLIFKSSVARYARTLATTFAAGVPLVEALDSVAGATGNVVFRDAVNKVKQDVSTGM
QLNFSMRSTGVFPSLAIQMTAIGEESGALDNMLDKVATYYEDEVDNMVDNLTSLMEPMIMAVLGVIVGGLVIAMYLPIFK
LGNVV
MASKAVKVSVYTWEGVDKKGGKLSGEVSGHNLALVKAQLRKQGINFTKVRKKPVSIFGKGKKIKPLDIAFFSRQMATMMK
AGVPLLQSFDIIAEGAENPNMRALVGSLKQEVSAGNSFATALRQKPEYFDDLFCNLVDAGEQAGALESLLDRIASYKEKT
EKLKAKIKKAMTYPIAVLIVAIIVSGILLIKVVPQFQSVFAGFGAELPAFTLMVIGLSDIVQKWWLAIVGLFFVGAFLFK
RAYKQSEKFRDNIDRFLLKVPIIGPLIFKSSVARYARTLATTFAAGVPLVEALDSVAGATGNVVFRDAVNKVKQDVSTGM
QLNFSMRSTGVFPSLAIQMTAIGEESGALDNMLDKVATYYEDEVDNMVDNLTSLMEPMIMAVLGVIVGGLVIAMYLPIFK
LGNVV
Nucleotide
Download Length: 1218 bp
>NTDB_id=1036284 AB9V61_RS03825 WP_011167727.1 875238..876455(-) (pilC) [Pseudomonas savastanoi pv. phaseolicola strain HB10Y]
ATGGCCAGCAAGGCAGTTAAAGTCAGTGTTTACACATGGGAAGGTGTGGACAAGAAAGGCGGCAAACTCAGTGGCGAAGT
GAGCGGGCACAATCTTGCGCTCGTAAAGGCTCAACTGCGCAAGCAAGGTATCAACTTCACCAAGGTACGTAAAAAGCCTG
TTTCGATATTTGGCAAAGGCAAGAAGATCAAGCCGCTGGACATCGCATTCTTTTCTCGGCAGATGGCGACCATGATGAAG
GCAGGCGTGCCGCTTCTGCAGTCATTTGACATCATTGCCGAGGGTGCGGAAAACCCGAACATGCGTGCACTGGTTGGCTC
ACTGAAGCAGGAGGTGTCGGCAGGGAACAGCTTTGCGACGGCTCTGCGACAGAAACCGGAATACTTCGATGACCTGTTTT
GTAATTTGGTCGATGCGGGCGAGCAAGCAGGTGCACTCGAGAGTCTCTTGGACCGCATCGCTAGCTACAAGGAAAAGACT
GAAAAGCTCAAAGCAAAAATCAAAAAAGCCATGACATACCCTATTGCTGTGTTGATCGTCGCAATTATCGTGTCAGGTAT
TTTGCTCATCAAAGTGGTGCCGCAGTTTCAGTCAGTTTTCGCAGGCTTTGGCGCAGAGCTACCCGCATTTACTCTCATGG
TAATCGGCTTATCAGATATCGTACAGAAATGGTGGTTAGCAATAGTTGGTCTTTTTTTCGTAGGCGCTTTTTTGTTCAAA
CGAGCTTATAAGCAGTCTGAAAAATTTCGCGATAATATTGATCGGTTTCTGCTGAAAGTACCGATCATTGGACCGCTTAT
TTTCAAGTCTTCCGTAGCTCGCTACGCGCGGACACTTGCAACAACATTCGCAGCAGGCGTTCCTCTAGTGGAGGCACTTG
ACTCAGTTGCAGGTGCTACCGGCAATGTTGTTTTCAGAGACGCTGTAAACAAGGTCAAACAAGACGTTTCCACAGGCATG
CAGTTGAATTTTTCGATGCGATCGACCGGTGTTTTTCCAAGCTTGGCAATCCAGATGACGGCCATAGGCGAGGAATCAGG
CGCGTTGGACAATATGCTGGACAAGGTAGCGACCTACTACGAGGATGAGGTCGACAATATGGTCGACAACTTAACCAGCC
TGATGGAGCCCATGATCATGGCTGTGCTGGGTGTCATCGTCGGCGGCCTTGTTATCGCCATGTACCTCCCCATTTTCAAA
CTCGGAAACGTCGTCTGA
ATGGCCAGCAAGGCAGTTAAAGTCAGTGTTTACACATGGGAAGGTGTGGACAAGAAAGGCGGCAAACTCAGTGGCGAAGT
GAGCGGGCACAATCTTGCGCTCGTAAAGGCTCAACTGCGCAAGCAAGGTATCAACTTCACCAAGGTACGTAAAAAGCCTG
TTTCGATATTTGGCAAAGGCAAGAAGATCAAGCCGCTGGACATCGCATTCTTTTCTCGGCAGATGGCGACCATGATGAAG
GCAGGCGTGCCGCTTCTGCAGTCATTTGACATCATTGCCGAGGGTGCGGAAAACCCGAACATGCGTGCACTGGTTGGCTC
ACTGAAGCAGGAGGTGTCGGCAGGGAACAGCTTTGCGACGGCTCTGCGACAGAAACCGGAATACTTCGATGACCTGTTTT
GTAATTTGGTCGATGCGGGCGAGCAAGCAGGTGCACTCGAGAGTCTCTTGGACCGCATCGCTAGCTACAAGGAAAAGACT
GAAAAGCTCAAAGCAAAAATCAAAAAAGCCATGACATACCCTATTGCTGTGTTGATCGTCGCAATTATCGTGTCAGGTAT
TTTGCTCATCAAAGTGGTGCCGCAGTTTCAGTCAGTTTTCGCAGGCTTTGGCGCAGAGCTACCCGCATTTACTCTCATGG
TAATCGGCTTATCAGATATCGTACAGAAATGGTGGTTAGCAATAGTTGGTCTTTTTTTCGTAGGCGCTTTTTTGTTCAAA
CGAGCTTATAAGCAGTCTGAAAAATTTCGCGATAATATTGATCGGTTTCTGCTGAAAGTACCGATCATTGGACCGCTTAT
TTTCAAGTCTTCCGTAGCTCGCTACGCGCGGACACTTGCAACAACATTCGCAGCAGGCGTTCCTCTAGTGGAGGCACTTG
ACTCAGTTGCAGGTGCTACCGGCAATGTTGTTTTCAGAGACGCTGTAAACAAGGTCAAACAAGACGTTTCCACAGGCATG
CAGTTGAATTTTTCGATGCGATCGACCGGTGTTTTTCCAAGCTTGGCAATCCAGATGACGGCCATAGGCGAGGAATCAGG
CGCGTTGGACAATATGCTGGACAAGGTAGCGACCTACTACGAGGATGAGGTCGACAATATGGTCGACAACTTAACCAGCC
TGATGGAGCCCATGATCATGGCTGTGCTGGGTGTCATCGTCGGCGGCCTTGTTATCGCCATGTACCTCCCCATTTTCAAA
CTCGGAAACGTCGTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
74.568 |
100 |
0.746 |
| pilC | Acinetobacter baylyi ADP1 |
59.512 |
100 |
0.602 |
| pilC | Acinetobacter baumannii D1279779 |
58.911 |
99.753 |
0.588 |
| pilC | Legionella pneumophila strain ERS1305867 |
52.778 |
97.778 |
0.516 |
| pilG | Neisseria gonorrhoeae MS11 |
43.672 |
99.506 |
0.435 |
| pilG | Neisseria meningitidis 44/76-A |
43.672 |
99.506 |
0.435 |
| pilC | Vibrio campbellii strain DS40M4 |
42.015 |
100 |
0.422 |
| pilC | Vibrio cholerae strain A1552 |
41.728 |
100 |
0.417 |
| pilC | Thermus thermophilus HB27 |
38.557 |
99.259 |
0.383 |