Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AB9V62_RS03505 Genome accession   NZ_CP166923
Coordinates   763029..764246 (-) Length   405 a.a.
NCBI ID   WP_206409166.1    Uniprot ID   -
Organism   Pseudomonas oleovorans strain ERA     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 758029..769246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9V62_RS03465 (AB9V62_03470) - 758099..758272 (-) 174 WP_004425016.1 DUF3094 family protein -
  AB9V62_RS03470 (AB9V62_03475) - 758497..759051 (-) 555 WP_092379923.1 MOSC domain-containing protein -
  AB9V62_RS03475 (AB9V62_03480) - 759048..759677 (-) 630 WP_004425012.1 DUF1780 domain-containing protein -
  AB9V62_RS03480 (AB9V62_03485) - 759888..760577 (+) 690 WP_206409163.1 energy-coupling factor ABC transporter permease -
  AB9V62_RS03485 (AB9V62_03490) - 760684..760899 (+) 216 WP_116617876.1 hypothetical protein -
  AB9V62_RS03490 (AB9V62_03495) yacG 761063..761257 (-) 195 WP_017678823.1 DNA gyrase inhibitor YacG -
  AB9V62_RS03495 (AB9V62_03500) coaE 761254..761862 (-) 609 WP_206409164.1 dephospho-CoA kinase -
  AB9V62_RS03500 (AB9V62_03505) pilD 762159..763028 (-) 870 WP_206409165.1 A24 family peptidase Machinery gene
  AB9V62_RS03505 (AB9V62_03510) pilC 763029..764246 (-) 1218 WP_206409166.1 type II secretion system F family protein Machinery gene
  AB9V62_RS03510 (AB9V62_03515) pilB 764249..765952 (-) 1704 WP_206409167.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AB9V62_RS03515 (AB9V62_03520) - 766175..766609 (+) 435 WP_206409168.1 pilin -
  AB9V62_RS03520 (AB9V62_03525) - 766693..768591 (+) 1899 WP_373629864.1 sulfatase-like hydrolase/transferase -
  AB9V62_RS03525 (AB9V62_03530) - 769085..769186 (+) 102 Protein_697 transposase -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43830.50 Da        Isoelectric Point: 9.9415

>NTDB_id=1036250 AB9V62_RS03505 WP_206409166.1 763029..764246(-) (pilC) [Pseudomonas oleovorans strain ERA]
MAGKALKTSVFTWEGKNKSGAVVKGELSGQNPSLVKAQLRKQGINPTKVRKKGVSLFSAGKKIKPMDIALFTRQMATMMK
AGVPLLQSFDIISEGFDNPNMRKLVDEVKQEVAAGNSFAASLRKKPQYFDELYCNLVESGEQAGALENLLDRIATYKEKT
EALKAKIKKAMNYPIAVVVVAIIVSAILLIKVVPQFQDVFAGFGAELPAFTQMVINISEALQTWWFIVLIAILASSFAFK
EAMKRSQKLRDSVDRGVLKLPIVGDILYKSAVARFARTLSTTFAAGVPLVDALDSVSGATGNVVFKNATNKIKADVSTGM
QLNFSMRTTGTFPSMAVQMTAIGEESGSLDEMLDKVASFYEAEVDNMVDGLTSLMEPIIMSVLGVLIGGLIIAMYLPIFQ
LGAVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1036250 AB9V62_RS03505 WP_206409166.1 763029..764246(-) (pilC) [Pseudomonas oleovorans strain ERA]
ATGGCGGGAAAAGCTCTAAAAACCAGTGTGTTCACCTGGGAAGGCAAGAACAAAAGCGGTGCCGTCGTCAAGGGGGAGCT
CAGCGGGCAGAACCCGTCCTTGGTCAAGGCGCAACTGCGCAAACAGGGGATCAATCCGACCAAAGTACGCAAAAAGGGGG
TGTCGCTCTTCAGCGCAGGCAAGAAGATCAAACCCATGGATATCGCCCTGTTTACCCGGCAGATGGCGACCATGATGAAA
GCTGGCGTGCCACTGCTGCAGTCCTTCGACATCATCTCAGAGGGCTTCGACAACCCCAACATGCGCAAGCTGGTCGACGA
GGTGAAGCAGGAGGTGGCTGCTGGTAACAGTTTTGCCGCCTCGCTGCGCAAGAAACCACAGTACTTCGATGAACTGTATT
GCAACCTGGTTGAGTCTGGCGAACAGGCCGGCGCGCTGGAGAATCTGCTGGACCGAATCGCCACCTACAAAGAAAAGACC
GAAGCGCTGAAGGCCAAGATCAAGAAGGCGATGAACTATCCCATCGCTGTTGTGGTGGTCGCCATCATCGTCTCAGCCAT
TTTGCTCATTAAAGTTGTTCCGCAGTTCCAAGACGTCTTTGCCGGGTTTGGTGCAGAGTTACCAGCCTTCACTCAGATGG
TGATCAATATCTCCGAGGCTCTGCAAACATGGTGGTTCATTGTGTTGATCGCCATATTGGCCTCTTCATTTGCCTTCAAA
GAGGCGATGAAACGTTCACAGAAGCTCCGTGACTCGGTTGACCGTGGCGTACTGAAACTGCCAATCGTCGGCGACATTCT
TTACAAATCTGCGGTAGCCCGCTTCGCACGCACACTATCAACGACTTTTGCCGCTGGCGTGCCACTGGTCGATGCGCTGG
ATTCGGTCTCCGGCGCCACCGGTAATGTGGTGTTTAAGAATGCGACCAACAAGATCAAAGCAGATGTATCTACCGGCATG
CAGCTTAACTTCTCAATGCGCACCACCGGCACCTTCCCCTCCATGGCCGTGCAGATGACCGCTATTGGCGAAGAGTCTGG
CTCGCTGGATGAGATGCTCGATAAGGTAGCGAGCTTCTATGAAGCAGAAGTGGACAACATGGTTGACGGCCTGACCAGCC
TGATGGAACCCATCATCATGTCCGTACTGGGCGTACTGATCGGCGGCCTAATCATCGCCATGTACCTACCTATCTTCCAG
CTGGGCGCCGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

82.469

100

0.825
  pilC Acinetobacter baumannii D1279779

60.396

99.753

0.602
  pilC Acinetobacter baylyi ADP1

61.055

98.272

0.6
  pilC Legionella pneumophila strain ERS1305867

53.03

97.778

0.519
  pilG Neisseria gonorrhoeae MS11

45.274

99.259

0.449
  pilG Neisseria meningitidis 44/76-A

45.274

99.259

0.449
  pilC Vibrio cholerae strain A1552

41.728

100

0.417
  pilC Vibrio campbellii strain DS40M4

40.909

97.778

0.4

Multiple sequence alignment