Detailed information NTG1036249

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB9V62_RS03500
• Genome accession: NZ_CP166923
• Coordinates: 762159..763028 (-)
• Length: 289 a.a.
• NCBI ID: WP_206409165.1
• Uniprot ID: -
• Organism: Pseudomonas oleovorans strain ERA
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 757159..768028

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB9V62_RS03465 (AB9V62_03470)	-	758099..758272 (-)	174	WP_004425016.1	DUF3094 family protein	-
AB9V62_RS03470 (AB9V62_03475)	-	758497..759051 (-)	555	WP_092379923.1	MOSC domain-containing protein	-
AB9V62_RS03475 (AB9V62_03480)	-	759048..759677 (-)	630	WP_004425012.1	DUF1780 domain-containing protein	-
AB9V62_RS03480 (AB9V62_03485)	-	759888..760577 (+)	690	WP_206409163.1	energy-coupling factor ABC transporter permease	-
AB9V62_RS03485 (AB9V62_03490)	-	760684..760899 (+)	216	WP_116617876.1	hypothetical protein	-
AB9V62_RS03490 (AB9V62_03495)	yacG	761063..761257 (-)	195	WP_017678823.1	DNA gyrase inhibitor YacG	-
AB9V62_RS03495 (AB9V62_03500)	coaE	761254..761862 (-)	609	WP_206409164.1	dephospho-CoA kinase	-
AB9V62_RS03500 (AB9V62_03505)	pilD	762159..763028 (-)	870	WP_206409165.1	A24 family peptidase	Machinery gene
AB9V62_RS03505 (AB9V62_03510)	pilC	763029..764246 (-)	1218	WP_206409166.1	type II secretion system F family protein	Machinery gene
AB9V62_RS03510 (AB9V62_03515)	pilB	764249..765952 (-)	1704	WP_206409167.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AB9V62_RS03515 (AB9V62_03520)	-	766175..766609 (+)	435	WP_206409168.1	pilin	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31835.01 Da
• Isoelectric Point: 6.8190

>NTDB_id=1036249 AB9V62_RS03500 WP_206409165.1 762159..763028(-) (pilD) [Pseudomonas oleovorans strain ERA]
MLAIDFLASHVLAFVLCALLLGLLIGSFLNVVIYRLPVMLQRDWQSQAREVLELPPAPATQTFNLILPNSCCTQCGHEIR
PWENIPVISYLFLRGKCSNCKIPISKRYPIVELACGLLSAYVAWHFGFTWQAGAMLVLAWGLLAMSLIDADHQILPDVLV
LPLLWLGLIVNYFGLFTSLEDALWGAIAGYLSLWSVYWLFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AVLGVILLRMRGSDSGTPIPFGPYLAIAGWIALLWGDVITGSYLKFAGF

Nucleotide

• Length: 870 bp

>NTDB_id=1036249 AB9V62_RS03500 WP_206409165.1 762159..763028(-) (pilD) [Pseudomonas oleovorans strain ERA]
ATGCTTGCTATCGACTTTCTGGCCAGCCATGTGCTGGCCTTTGTTTTGTGTGCTCTGCTACTGGGCCTGCTGATTGGCAG
CTTCCTCAATGTAGTGATCTATCGCCTGCCGGTGATGCTGCAACGCGATTGGCAAAGCCAGGCGCGCGAGGTGCTGGAGT
TACCGCCGGCACCGGCCACTCAGACCTTCAACCTTATCCTGCCCAACTCCTGCTGCACGCAATGCGGCCATGAGATTCGC
CCTTGGGAGAACATCCCGGTCATCAGCTATCTGTTTCTGCGCGGCAAGTGCTCGAACTGCAAAATCCCGATCAGCAAGCG
TTACCCCATCGTTGAACTGGCCTGCGGGCTGCTTTCCGCTTACGTCGCCTGGCATTTCGGTTTCACCTGGCAGGCCGGAG
CGATGCTGGTGCTGGCCTGGGGGCTGCTGGCGATGAGTCTGATCGATGCTGATCACCAGATTCTGCCGGATGTACTGGTG
CTGCCGTTGCTGTGGCTGGGCTTGATCGTCAATTACTTCGGGCTTTTCACCAGCCTGGAGGATGCTCTGTGGGGTGCAAT
TGCCGGTTATCTGAGCCTGTGGTCGGTGTACTGGCTGTTCAAGCTGATCACCGGCAAGGAAGGCATGGGTTATGGCGACT
TCAAGCTGCTGGCGATGCTCGGTGCCTGGGGTGGCTGGCAGATTCTGCCGTTGACCATTCTGCTGTCGTCGCTGGTCGGC
GCGGTGCTGGGGGTGATTCTGCTGCGTATGCGTGGCAGCGACTCCGGCACGCCGATTCCCTTCGGCCCTTATCTGGCGAT
TGCCGGGTGGATCGCCCTGCTGTGGGGTGATGTGATTACCGGCAGTTATCTGAAGTTCGCTGGGTTTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	52.297	97.924	0.512
pilD	Vibrio cholerae strain A1552	53.65	94.81	0.509
pilD	Acinetobacter nosocomialis M2	51.943	97.924	0.509
pilD	Vibrio campbellii strain DS40M4	52.747	94.464	0.498
pilD	Neisseria gonorrhoeae MS11	49.81	91.003	0.453