Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ACAW63_RS02105 Genome accession   NZ_CP166873
Coordinates   467099..469237 (-) Length   712 a.a.
NCBI ID   WP_371231341.1    Uniprot ID   -
Organism   Pseudomonas sp. QE6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 462099..474237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAW63_RS02090 (ACAW63_02090) - 463723..465408 (-) 1686 WP_371231338.1 AAA family ATPase -
  ACAW63_RS02095 (ACAW63_02095) aroB 465415..466521 (-) 1107 WP_371231339.1 3-dehydroquinate synthase -
  ACAW63_RS02100 (ACAW63_02100) aroK 466572..467063 (-) 492 WP_371234550.1 shikimate kinase AroK -
  ACAW63_RS02105 (ACAW63_02105) pilQ 467099..469237 (-) 2139 WP_371231341.1 type IV pilus secretin PilQ Machinery gene
  ACAW63_RS02110 (ACAW63_02110) pilP 469291..469815 (-) 525 WP_371231342.1 type 4a pilus biogenesis lipoprotein PilP -
  ACAW63_RS02115 (ACAW63_02115) pilO 469812..470462 (-) 651 WP_371231343.1 type 4a pilus biogenesis protein PilO -
  ACAW63_RS02120 (ACAW63_02120) pilN 470459..471052 (-) 594 WP_275608990.1 type 4a pilus biogenesis protein PilN -
  ACAW63_RS02125 (ACAW63_02125) pilM 471052..472116 (-) 1065 WP_207882126.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 712 a.a.        Molecular weight: 76550.05 Da        Isoelectric Point: 5.1915

>NTDB_id=1035860 ACAW63_RS02105 WP_371231341.1 467099..469237(-) (pilQ) [Pseudomonas sp. QE6]
MNKMLSRLSISLLAAVFAPALLAANLQSVDVAALPGDRVELKLGFDGPVATPRGYTIEQPARIALDLPGVQNKLGSKNRE
LGVGNARSLTVVEAKDRTRLIVNLATLVPYTTRSEGSNLYVVVGGAGAASSSYASAAPASTPIARPAQPKPYVPAGKAIR
NIDFQRGEQGEGNVVIDLSDPTVSPDIQEQGGKIRLEFPRTQLPDNLRVRLDVKDFATPVQFVNAAAAGDKASITIEPTG
VYDYLVYQTDNRMTVSIKPLTQDDAEKRKKDAFAYTGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVQGNITLRLQN
VPWDQALDLVLKTKGLDKRKVGNVLLVAPAEEIAARERQELEAQKQISELAPLRRELIQVNYAKAADIAKLFQSVTGLGA
PGAPQAAGADNRGSLTVDDRTNAIIAYQTQDRLDELRRIVAQLDIPVRQVMIEARIVEAAVDYSKSLGVRWGGAFSSGNW
DFYGKDGARTVSDGQLFLPGTDTIGNFKAQDGVAPVPFVDMGVANSTSGIGIGFLSDHAMLDLQLSAMEKSGNGEVVSQP
KVVTSDKETAKILKGSEIPYQEASSSGATSVSFKEAALALEVTPQITPDNRIIMEVKVNKDEPDYANALNGVPPIKKNEV
NAKVLVNDGETIVIGGVFSNTQTKAVDKVPFLGDVPFIGRLFRRDTVTDSKSELLVFLTPRIMNNQAFAVGR

Nucleotide


Download         Length: 2139 bp        

>NTDB_id=1035860 ACAW63_RS02105 WP_371231341.1 467099..469237(-) (pilQ) [Pseudomonas sp. QE6]
ATGAACAAAATGCTTTCCCGCCTGAGCATCTCCTTGCTCGCGGCAGTCTTTGCGCCGGCTTTGCTGGCGGCCAACTTGCA
GAGCGTCGATGTGGCAGCCCTGCCGGGCGACCGGGTCGAGCTGAAACTGGGCTTCGACGGCCCGGTGGCGACGCCGCGCG
GTTACACCATCGAGCAGCCGGCACGCATCGCGCTGGATCTGCCGGGTGTGCAGAACAAGCTGGGTAGCAAGAACCGCGAG
CTGGGTGTGGGCAATGCGCGCAGCCTGACGGTGGTTGAGGCGAAAGATCGCACCCGCCTGATCGTCAACCTGGCCACCCT
GGTGCCTTATACTACCCGGTCGGAAGGTTCGAATCTGTACGTCGTGGTCGGTGGGGCGGGAGCTGCGTCGAGCTCCTATG
CTTCCGCTGCGCCCGCATCCACTCCGATTGCCAGGCCTGCACAGCCCAAGCCTTACGTTCCAGCCGGCAAGGCGATTCGC
AATATCGACTTCCAGCGTGGCGAACAGGGTGAAGGCAATGTCGTGATCGACCTGTCCGATCCGACCGTCAGCCCGGACAT
CCAGGAGCAGGGCGGCAAGATCCGTCTGGAGTTCCCGCGTACCCAGTTGCCCGACAATCTGCGCGTGCGCCTCGATGTGA
AGGACTTCGCCACGCCGGTGCAGTTCGTCAATGCTGCCGCGGCGGGCGACAAGGCCAGCATCACCATCGAGCCGACTGGC
GTATACGACTATCTCGTCTATCAGACCGATAACCGGATGACCGTCAGCATCAAGCCGCTGACCCAGGATGATGCCGAGAA
ACGCAAGAAGGATGCCTTCGCCTATACGGGCGAGAAGCTTTCGCTGAACTTCCAGGACATCGACGTACGCTCGGTGCTGC
AGCTGATCGCCGACTTCACCGACCTGAACCTGGTGGCGTCCGATACCGTTCAGGGCAACATCACCCTGCGTCTGCAGAAT
GTGCCGTGGGATCAGGCGCTGGACCTGGTGCTTAAGACCAAGGGGCTGGATAAGCGCAAGGTGGGTAACGTTCTGCTGGT
TGCACCGGCGGAAGAGATCGCCGCGCGCGAGCGTCAGGAGCTGGAGGCCCAGAAGCAGATTTCCGAACTGGCTCCCCTGC
GTCGCGAGCTGATTCAGGTGAACTACGCCAAGGCCGCTGACATTGCCAAGTTGTTCCAGTCGGTGACTGGACTAGGTGCT
CCGGGTGCGCCGCAGGCGGCGGGTGCGGATAATCGTGGCTCGCTCACCGTTGATGATCGCACTAACGCGATCATCGCCTA
CCAGACCCAGGACCGCCTGGATGAGTTGCGTCGCATCGTTGCTCAACTGGATATCCCGGTTCGCCAGGTGATGATCGAGG
CGCGCATCGTTGAGGCCGCTGTGGACTACAGCAAGAGTCTGGGGGTTCGCTGGGGGGGGGCGTTCAGTTCAGGCAATTGG
GACTTCTACGGCAAGGATGGCGCGCGTACAGTCAGCGACGGCCAACTGTTCTTGCCCGGCACCGATACGATTGGCAACTT
CAAGGCACAGGATGGCGTGGCGCCGGTCCCGTTCGTTGATATGGGTGTGGCCAACAGCACCTCGGGTATCGGCATCGGCT
TCCTGAGCGATCACGCCATGCTCGACCTGCAACTGTCGGCCATGGAAAAGAGCGGCAACGGCGAAGTGGTCTCTCAGCCG
AAGGTCGTCACCTCCGACAAGGAAACCGCGAAGATTCTCAAGGGCTCGGAGATTCCCTACCAGGAAGCCAGCTCCAGCGG
CGCCACCTCGGTGTCCTTCAAGGAGGCCGCGCTGGCCCTGGAAGTGACCCCGCAGATCACCCCGGACAACCGCATCATCA
TGGAGGTGAAGGTCAACAAGGACGAGCCGGACTACGCCAACGCGCTGAATGGCGTGCCGCCGATCAAGAAGAACGAGGTG
AACGCCAAGGTGCTGGTCAACGATGGCGAGACCATCGTGATCGGTGGTGTGTTCTCCAATACCCAGACCAAGGCGGTGGA
CAAGGTGCCGTTCCTGGGCGACGTTCCGTTCATTGGGCGCCTGTTCCGTCGCGATACGGTAACCGACAGCAAGAGCGAAC
TGCTGGTTTTCCTTACCCCGCGGATCATGAATAATCAGGCCTTTGCAGTCGGCCGTTGA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(377-449)

Secretin and TonB N terminus short domain (STN)

(303-349)

Bacterial type II and III secretion system protein (Secretin)

(547-703)

AMIN domain (AMIN)

(39-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

78.237

100

0.798
  comQ Acinetobacter baylyi ADP1

41.16

100

0.419
  pilQ Acinetobacter baumannii D1279779

39.837

100

0.413
  pilQ Acinetobacter baumannii strain A118

39.837

100

0.413
  pilQ Legionella pneumophila strain ERS1305867

39.01

96.489

0.376
  pilQ Legionella pneumophila strain Lp02

38.865

96.489

0.375

Multiple sequence alignment