Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AB1S55_RS08130 Genome accession   NZ_CP166840
Coordinates   1858903..1860117 (-) Length   404 a.a.
NCBI ID   WP_370981308.1    Uniprot ID   -
Organism   Agaribacterium sp. ZY112     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1853903..1865117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1S55_RS08105 (AB1S55_08100) argJ 1855502..1856719 (+) 1218 WP_370981303.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  AB1S55_RS08110 (AB1S55_08105) mutT 1856722..1857111 (+) 390 WP_370981304.1 8-oxo-dGTP diphosphatase MutT -
  AB1S55_RS08115 (AB1S55_08110) - 1857167..1857361 (-) 195 WP_370981305.1 DNA gyrase inhibitor YacG -
  AB1S55_RS08120 (AB1S55_08115) coaE 1857440..1858036 (-) 597 WP_370981306.1 dephospho-CoA kinase -
  AB1S55_RS08125 (AB1S55_08120) pilD 1858036..1858899 (-) 864 WP_370981307.1 A24 family peptidase Machinery gene
  AB1S55_RS08130 (AB1S55_08125) pilC 1858903..1860117 (-) 1215 WP_370981308.1 type II secretion system F family protein Machinery gene
  AB1S55_RS08135 (AB1S55_08130) pilB 1860121..1861824 (-) 1704 WP_370981309.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AB1S55_RS08140 (AB1S55_08135) - 1862107..1862640 (+) 534 WP_370981310.1 pilin -
  AB1S55_RS08145 (AB1S55_08140) - 1862807..1863472 (-) 666 WP_370981311.1 hypothetical protein -
  AB1S55_RS08150 (AB1S55_08145) nadC 1863505..1864347 (-) 843 WP_370981312.1 carboxylating nicotinate-nucleotide diphosphorylase -
  AB1S55_RS08155 (AB1S55_08150) - 1864370..1864891 (-) 522 WP_370981313.1 TIGR02281 family clan AA aspartic protease -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 43623.15 Da        Isoelectric Point: 9.6697

>NTDB_id=1035614 AB1S55_RS08130 WP_370981308.1 1858903..1860117(-) (pilC) [Agaribacterium sp. ZY112]
MATNVTQLYLYKGTDKKGNKVSGEVSSTSPSLAKAQLIKQGIRAKNVRKKPSPLFGNGGARIKPMDIALFTRQLATMMKA
GVPLVQSFDIVAGGSDNKNLATLITEIKNEVASGTSFAASLRKKPKYFDDLFCNLIESGEQSGALETMLDRIATYKEKTE
QLKAKIKKAMTYPTAVLVVAAVVTGILLVKVVPQFAETFASFGAELPAFTLFVLNLSEMAQANWLKILIGSGIAAFCFSK
AKEKSKGFRIFLDRLTLKLPIVGQIVYLSIIARFSRTLSTTFAAGVPLIDALTSVAGSTGNYIYEQAVLQIREEVSTGTQ
LNTAMTQTKVFPAMVIQMTSIGEESGALDEMLDKSAGYYEEQVDNMVDSLTALLEPMIMAVLGILVGGLMVAMYLPIFQI
GQAI

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=1035614 AB1S55_RS08130 WP_370981308.1 1858903..1860117(-) (pilC) [Agaribacterium sp. ZY112]
ATGGCCACTAATGTTACACAATTATACTTATACAAAGGCACCGATAAAAAAGGTAATAAAGTTTCAGGCGAGGTATCTTC
GACTTCTCCATCTTTAGCAAAAGCCCAGCTAATAAAGCAAGGCATTAGAGCTAAAAATGTACGAAAAAAACCAAGTCCTC
TTTTCGGCAATGGCGGGGCTAGAATAAAACCAATGGATATAGCTTTATTTACTCGTCAATTAGCAACCATGATGAAGGCT
GGCGTCCCACTTGTTCAAAGCTTTGACATTGTGGCTGGAGGTTCGGACAATAAAAATTTAGCCACACTAATCACAGAAAT
TAAAAATGAAGTAGCATCCGGCACGAGCTTTGCCGCCTCCCTTAGGAAAAAACCAAAATATTTTGATGATCTTTTTTGCA
ATTTAATTGAGTCGGGCGAACAAAGTGGCGCGCTTGAAACAATGCTTGATCGCATTGCCACCTATAAAGAAAAAACCGAG
CAACTCAAAGCAAAAATTAAAAAAGCAATGACATACCCTACAGCAGTACTTGTAGTAGCCGCAGTTGTTACAGGGATTCT
TCTTGTAAAAGTTGTCCCTCAGTTTGCTGAAACTTTTGCCAGCTTCGGAGCAGAGCTTCCCGCTTTTACACTTTTTGTAC
TTAACTTATCAGAAATGGCTCAAGCCAACTGGTTGAAAATTTTGATCGGAAGCGGTATTGCCGCTTTTTGTTTTAGTAAA
GCCAAAGAAAAAAGCAAAGGATTTAGGATATTCCTTGACCGCCTTACACTAAAACTTCCAATTGTTGGACAAATTGTTTA
CTTATCTATTATCGCTCGCTTTTCCAGAACCCTATCCACCACTTTCGCTGCAGGGGTTCCGCTAATTGACGCCCTAACCT
CTGTGGCGGGCTCAACAGGCAACTATATATACGAACAAGCAGTCCTACAAATACGAGAAGAAGTTTCTACAGGCACCCAG
CTAAATACTGCAATGACTCAAACTAAAGTCTTCCCCGCAATGGTGATACAAATGACCTCTATTGGAGAGGAGTCAGGAGC
TTTAGATGAAATGCTAGACAAGTCTGCAGGGTATTATGAAGAGCAAGTCGACAACATGGTTGACAGCTTAACCGCACTCC
TCGAACCCATGATTATGGCCGTACTTGGAATTTTGGTAGGTGGACTAATGGTTGCCATGTATCTCCCAATCTTCCAAATT
GGTCAAGCGATATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(274-396)

Type II secretion system (T2SS), protein F (T2SSF)

(70-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

64.232

98.267

0.631
  pilC Acinetobacter baylyi ADP1

60.988

100

0.611
  pilC Acinetobacter baumannii D1279779

59.446

98.267

0.584
  pilC Legionella pneumophila strain ERS1305867

55.051

98.02

0.54
  pilG Neisseria gonorrhoeae MS11

42.569

98.267

0.418
  pilG Neisseria meningitidis 44/76-A

42.569

98.267

0.418
  pilC Vibrio cholerae strain A1552

42.092

97.03

0.408
  pilC Vibrio campbellii strain DS40M4

40.594

100

0.406

Multiple sequence alignment