Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OAM_RS13560 Genome accession   NZ_CP166824
Coordinates   3067706..3068935 (+) Length   409 a.a.
NCBI ID   WP_010435926.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus ZF14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3062706..3073935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OAM_RS13540 (OAM_013540) ampD 3063714..3064313 (-) 600 WP_010435939.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  OAM_RS13545 (OAM_013545) nadC 3064397..3065287 (+) 891 WP_010435936.1 carboxylating nicotinate-nucleotide diphosphorylase -
  OAM_RS13550 (OAM_013550) - 3065543..3065998 (+) 456 WP_010435932.1 pilin -
  OAM_RS13555 (OAM_013555) pilB 3066005..3067690 (+) 1686 WP_010435929.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OAM_RS13560 (OAM_013560) pilC 3067706..3068935 (+) 1230 WP_010435926.1 type II secretion system F family protein Machinery gene
  OAM_RS13565 (OAM_013565) pilD 3069002..3069871 (+) 870 WP_010435923.1 prepilin peptidase Machinery gene
  OAM_RS13570 (OAM_013570) coaE 3069874..3070488 (+) 615 WP_010435920.1 dephospho-CoA kinase -
  OAM_RS13575 (OAM_013575) zapD 3070515..3071255 (+) 741 WP_010435917.1 cell division protein ZapD -
  OAM_RS13580 (OAM_013580) yacG 3071337..3071534 (+) 198 WP_010435916.1 DNA gyrase inhibitor YacG -
  OAM_RS13585 (OAM_013585) rplS 3071813..3072166 (-) 354 WP_004735514.1 50S ribosomal protein L19 -
  OAM_RS13590 (OAM_013590) trmD 3072226..3072966 (-) 741 WP_010435912.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  OAM_RS13595 (OAM_013595) rimM 3072993..3073547 (-) 555 WP_016768202.1 ribosome maturation factor RimM -
  OAM_RS13600 (OAM_013600) rpsP 3073572..3073820 (-) 249 WP_004410028.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45201.30 Da        Isoelectric Point: 10.1582

>NTDB_id=1035447 OAM_RS13560 WP_010435926.1 3067706..3068935(+) (pilC) [Vibrio cyclitrophicus ZF14]
MSSKSKQSQLKSYHWKGINSSGKKVSGQTLALTELEVREKLKEQHIQIKKIKKKSISAITRITHRVKAKDITILTRQLAT
MLATGVPIVQAIKLVSDNHRKAEMKSILSHICKGVEAGTPISKAMRTASRHFDDLYTDLVATGELSGNLAQVFERLATYR
EKSEQLKAKVVKALIYPAMVVIVALTVSYLMLTMVIPEFESMFSGFGADLPWFTQQVLHLSHWMQAYSFYAAVSIGLVVL
IIYQLCQRSHSIRLSVSRLGLRFPVLGGVMAKASIAKFSRTLSTSFSSGIPILVSLKTTAKTAGNLHYESAIIEVHRETA
AGMPMYIAMRNTNAFPEMVLQMVMIGEESGNLDDMLNKVASIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLP
IFNLMSVLG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=1035447 OAM_RS13560 WP_010435926.1 3067706..3068935(+) (pilC) [Vibrio cyclitrophicus ZF14]
ATGAGTAGCAAGTCCAAACAGTCACAATTAAAAAGCTATCACTGGAAAGGCATTAACAGCTCTGGCAAGAAAGTGTCTGG
GCAGACCTTAGCGCTTACTGAATTAGAAGTACGGGAAAAGCTCAAAGAGCAGCATATCCAAATTAAGAAAATCAAAAAGA
AAAGTATCTCAGCAATCACTCGCATAACACACCGAGTCAAAGCCAAGGACATCACTATTTTGACGAGACAGCTTGCTACC
ATGCTCGCTACGGGTGTGCCTATCGTGCAAGCCATAAAGTTGGTATCAGATAATCATCGTAAAGCAGAAATGAAATCGAT
TTTATCGCATATCTGCAAAGGTGTAGAAGCCGGAACGCCAATCTCAAAAGCAATGCGAACCGCAAGCCGCCACTTTGATG
ATCTCTATACTGATTTAGTCGCGACAGGAGAGCTCTCCGGCAATCTTGCACAAGTATTCGAACGCTTAGCGACCTATCGT
GAAAAAAGTGAACAGTTAAAAGCTAAGGTGGTGAAAGCGCTTATCTATCCAGCAATGGTGGTCATCGTTGCACTGACTGT
TTCTTATTTAATGCTGACTATGGTAATTCCGGAATTTGAGTCGATGTTTTCAGGCTTCGGTGCTGATCTACCGTGGTTTA
CTCAACAGGTGCTACATCTTTCTCACTGGATGCAGGCTTACAGTTTTTATGCGGCGGTAAGCATCGGGCTTGTTGTCCTG
ATTATTTACCAACTGTGTCAGCGCTCCCACTCGATCAGACTGTCTGTTAGCCGGTTAGGATTACGTTTCCCAGTTCTTGG
TGGGGTAATGGCAAAGGCCTCTATCGCCAAGTTCAGCCGCACCTTATCAACCAGCTTTAGCTCTGGTATTCCGATTCTAG
TGAGCCTCAAAACTACAGCCAAAACCGCAGGCAATCTGCATTATGAATCTGCGATCATCGAAGTACACCGAGAAACAGCC
GCCGGTATGCCTATGTATATCGCAATGCGCAACACCAATGCCTTCCCTGAAATGGTGTTACAGATGGTGATGATTGGTGA
AGAGTCAGGTAACCTTGATGATATGCTGAATAAAGTCGCTTCCATCTATGAGTTTGAAGTCGACAATACCGTCGACAACT
TAGGCAAAATTTTAGAGCCACTGATCATCGTGTTTTTAGGTACAGTTGTGGGTGGGCTTGTTGTCGCGATGTACTTACCA
ATCTTTAATCTTATGAGTGTGTTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-197)

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

79.75

97.8

0.78
  pilC Vibrio campbellii strain DS40M4

73.645

99.267

0.731
  pilC Acinetobacter baylyi ADP1

41.32

100

0.413
  pilC Acinetobacter baumannii D1279779

41.584

98.778

0.411
  pilC Legionella pneumophila strain ERS1305867

42.317

97.066

0.411
  pilC Pseudomonas stutzeri DSM 10701

40.404

96.822

0.391
  pilG Neisseria gonorrhoeae MS11

40.1

97.555

0.391
  pilG Neisseria meningitidis 44/76-A

39.85

97.555

0.389

Multiple sequence alignment