Detailed information NTG1035448

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OAM_RS13565
• Genome accession: NZ_CP166824
• Coordinates: 3069002..3069871 (+)
• Length: 289 a.a.
• NCBI ID: WP_010435923.1
• Uniprot ID: -
• Organism: Vibrio cyclitrophicus ZF14
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3064002..3074871

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OAM_RS13545 (OAM_013545)	nadC	3064397..3065287 (+)	891	WP_010435936.1	carboxylating nicotinate-nucleotide diphosphorylase	-
OAM_RS13550 (OAM_013550)	-	3065543..3065998 (+)	456	WP_010435932.1	pilin	-
OAM_RS13555 (OAM_013555)	pilB	3066005..3067690 (+)	1686	WP_010435929.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OAM_RS13560 (OAM_013560)	pilC	3067706..3068935 (+)	1230	WP_010435926.1	type II secretion system F family protein	Machinery gene
OAM_RS13565 (OAM_013565)	pilD	3069002..3069871 (+)	870	WP_010435923.1	prepilin peptidase	Machinery gene
OAM_RS13570 (OAM_013570)	coaE	3069874..3070488 (+)	615	WP_010435920.1	dephospho-CoA kinase	-
OAM_RS13575 (OAM_013575)	zapD	3070515..3071255 (+)	741	WP_010435917.1	cell division protein ZapD	-
OAM_RS13580 (OAM_013580)	yacG	3071337..3071534 (+)	198	WP_010435916.1	DNA gyrase inhibitor YacG	-
OAM_RS13585 (OAM_013585)	rplS	3071813..3072166 (-)	354	WP_004735514.1	50S ribosomal protein L19	-
OAM_RS13590 (OAM_013590)	trmD	3072226..3072966 (-)	741	WP_010435912.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
OAM_RS13595 (OAM_013595)	rimM	3072993..3073547 (-)	555	WP_016768202.1	ribosome maturation factor RimM	-
OAM_RS13600 (OAM_013600)	rpsP	3073572..3073820 (-)	249	WP_004410028.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32507.69 Da
• Isoelectric Point: 7.6347

>NTDB_id=1035448 OAM_RS13565 WP_010435923.1 3069002..3069871(+) (pilD) [Vibrio cyclitrophicus ZF14]
MEVFHYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIIMEREWQQECSEYFSQYKIPAPEGKFNLSIPRSTCPKCKTQLRAI
DNIPVLSWLFLKGKCHSCTNPISARYPLVELLTAILCTVVASHFGLSYYAIALIFFTFALITATFIDLDTMLLPDQITLP
LVWSGIALALFNISPVSLQDSVVGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPMIILLSSLVGL
VFGLIQLRLKQQGIDKAFPFGPYLAIAGWVSLMWGNDIMGWYFTSVLGI

Nucleotide

• Length: 870 bp

>NTDB_id=1035448 OAM_RS13565 WP_010435923.1 3069002..3069871(+) (pilD) [Vibrio cyclitrophicus ZF14]
ATGGAAGTATTTCACTACTATCCTTGGCTATTCCCCGTATTAGCTTTCATTTTTAGCCTCCTTATCGGTAGCTTCCTCAA
TGTGGTCATACATCGTTTACCGATTATAATGGAGCGTGAGTGGCAACAAGAGTGCTCGGAGTATTTTTCTCAATATAAAA
TTCCAGCACCAGAAGGAAAGTTTAATCTCAGCATTCCTCGCTCTACTTGCCCTAAGTGTAAAACCCAACTGAGAGCAATC
GACAACATCCCTGTATTAAGCTGGTTATTCCTAAAAGGTAAGTGCCACAGTTGTACTAACCCCATCAGCGCCCGTTATCC
CTTGGTCGAACTGCTTACCGCAATCCTTTGTACAGTCGTAGCTAGCCACTTTGGTCTCAGTTATTACGCGATTGCTCTGA
TATTTTTTACTTTTGCTTTGATTACCGCGACCTTTATCGATCTCGATACTATGTTACTGCCGGATCAAATTACCTTACCT
TTGGTTTGGTCTGGTATCGCTTTGGCCTTATTTAATATCAGCCCGGTATCACTGCAAGATTCCGTCGTTGGAGCGATGGC
TGGTTACCTAGCACTTTGGTCTGTTTACTGGCTGTTCAAGCTGCTCACTGGCAAAGAAGGGATGGGGTACGGTGATTTTA
AATTGCTAGCGGCATTAGGGGCATGGCTTGGTTGGCAACATCTACCAATGATCATCCTTCTGTCATCGCTAGTGGGCCTT
GTGTTCGGATTGATTCAACTGCGACTGAAGCAACAAGGCATAGACAAAGCTTTCCCATTTGGGCCCTATCTAGCGATTGC
TGGTTGGGTAAGTCTGATGTGGGGTAACGACATCATGGGTTGGTATTTCACTTCTGTACTAGGAATTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	74.048	100	0.74
pilD	Vibrio cholerae strain A1552	69.097	99.654	0.689
pilD	Acinetobacter nosocomialis M2	50.936	92.388	0.471
pilD	Acinetobacter baumannii D1279779	50.562	92.388	0.467
pilD	Neisseria gonorrhoeae MS11	48.649	89.619	0.436