Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABK044_RS01190 Genome accession   NZ_CP166581
Coordinates   269302..270561 (+) Length   419 a.a.
NCBI ID   WP_049429912.1    Uniprot ID   A0AA42QIP8
Organism   Stenotrophomonas maltophilia strain 9605     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 264302..275561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABK044_RS01170 (ABK044_01170) pilR 264519..265892 (+) 1374 WP_005410795.1 sigma-54 dependent transcriptional regulator Regulator
  ABK044_RS01175 (ABK044_01175) pilB 266003..267736 (-) 1734 WP_005414305.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABK044_RS01180 (ABK044_01180) pilA/pilAI 267959..268366 (-) 408 WP_049429914.1 pilin Machinery gene
  ABK044_RS01185 (ABK044_01185) - 268517..268948 (-) 432 WP_049429913.1 pilin -
  ABK044_RS01190 (ABK044_01190) pilC 269302..270561 (+) 1260 WP_049429912.1 type II secretion system F family protein Machinery gene
  ABK044_RS01195 (ABK044_01195) - 270569..271432 (+) 864 WP_049429911.1 A24 family peptidase -
  ABK044_RS01200 (ABK044_01200) coaE 271444..272055 (+) 612 WP_049429910.1 dephospho-CoA kinase -
  ABK044_RS01205 (ABK044_01205) - 272261..273628 (-) 1368 WP_370671951.1 sensor histidine kinase -
  ABK044_RS01210 (ABK044_01210) - 273591..274268 (-) 678 WP_005410804.1 response regulator transcription factor -
  ABK044_RS01215 (ABK044_01215) - 274277..274747 (-) 471 WP_005410805.1 hypothetical protein -
  ABK044_RS01220 (ABK044_01220) - 274837..275313 (-) 477 WP_049429908.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45884.30 Da        Isoelectric Point: 10.1071

>NTDB_id=1034819 ABK044_RS01190 WP_049429912.1 269302..270561(+) (pilC) [Stenotrophomonas maltophilia strain 9605]
MSVSRSAIKKEPVARATMELQPFVWEGTDKRGVKMKGEQLAKNANLLRAELRRQGINPGQVKPKPKPLFGAAGSPVKPKD
IAFFSRQMATMMKSGVPIVSALDIIASGHKNPRMKKLVDTIRTDIEGGSSMYEAVSKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKALFYPIMVVVVAMLVSGIMLVFVVPQFEDVFKSFGAELPAFTQLVVNLSRFMVSWWWL
IFLIVVGSAVGAIMAYKRSPKMQHAMDRFVLKVPVIGQIMHNSAIARFSRTTAVTFKAGVPLVEALGIVAGATGNTVYEE
AVLRMRDDVSVGYPVNMSMKQTNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNSVDALSSLLEPMIMVFIGTIV
GGMVIAMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1034819 ABK044_RS01190 WP_049429912.1 269302..270561(+) (pilC) [Stenotrophomonas maltophilia strain 9605]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAAGAGCCGGTGGCGCGCGCCACCATGGAACTGCAGCCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGCGTGAAGATGAAGGGCGAGCAGCTGGCCAAGAACGCCAACCTGCTGCGCGCCGAACTGCGCCGCC
AGGGCATCAACCCGGGCCAGGTCAAGCCCAAGCCGAAGCCGCTGTTCGGCGCCGCCGGCAGCCCGGTCAAGCCCAAGGAC
ATCGCCTTCTTCAGCCGGCAGATGGCCACGATGATGAAATCCGGCGTGCCGATCGTGTCGGCGCTGGACATCATCGCCAG
CGGGCACAAGAACCCGCGGATGAAGAAGCTGGTGGACACCATCCGCACCGACATCGAGGGCGGCTCCTCCATGTACGAGG
CGGTCAGCAAGCACCCGGTGCAGTTCGACGAGCTGTACCGCAACCTGGTGCGGGCCGGCGAAGGCGCCGGCGTGCTGGAA
ACCGTGCTGGACACGGTGGCCACCTACAAGGAGAACATCGAAGCGCTGAAGGGCAAGATCAAGAAGGCGCTGTTCTACCC
GATCATGGTGGTGGTGGTAGCCATGCTGGTCAGCGGCATCATGCTGGTGTTCGTGGTGCCGCAGTTCGAGGACGTGTTCA
AGAGCTTCGGCGCCGAGCTGCCCGCCTTCACCCAGCTGGTGGTGAACCTCTCGCGGTTCATGGTGTCGTGGTGGTGGCTG
ATATTCCTGATCGTGGTGGGCTCCGCTGTCGGTGCCATCATGGCCTACAAGCGCTCGCCGAAGATGCAGCACGCGATGGA
CCGGTTCGTGCTGAAGGTACCGGTGATCGGGCAGATCATGCACAACAGCGCCATCGCCCGCTTCTCGCGCACCACCGCGG
TCACCTTCAAGGCCGGTGTGCCGCTGGTGGAGGCGCTGGGCATCGTGGCCGGTGCCACCGGCAACACCGTGTACGAAGAG
GCGGTGCTGCGCATGCGTGACGACGTCTCGGTAGGCTACCCGGTGAACATGTCGATGAAGCAGACCAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGTGAAGAGGCCGGCGCGCTGGATGCCATGCTGTTCAAGGTGGCCGAGTACTATG
AGCAGGAGGTCAACAATTCGGTGGATGCCCTGAGCAGCCTGCTGGAACCGATGATCATGGTGTTCATTGGTACCATTGTG
GGCGGCATGGTGATTGCCATGTACCTTCCCATCTTCAAACTCGGCGCCGTCGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.545

94.511

0.516
  pilC Legionella pneumophila strain ERS1305867

52.632

95.227

0.501
  pilC Acinetobacter baylyi ADP1

50.985

96.897

0.494
  pilC Acinetobacter baumannii D1279779

49.386

97.136

0.48
  pilG Neisseria gonorrhoeae MS11

43.97

94.988

0.418
  pilG Neisseria meningitidis 44/76-A

43.719

94.988

0.415
  pilC Vibrio cholerae strain A1552

41.872

96.897

0.406
  pilC Vibrio campbellii strain DS40M4

41.646

95.704

0.399
  pilC Thermus thermophilus HB27

37.562

95.943

0.36

Multiple sequence alignment