Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AB8O67_RS09320 Genome accession   NZ_CP166053
Coordinates   1763081..1764331 (+) Length   416 a.a.
NCBI ID   WP_369888559.1    Uniprot ID   -
Organism   Bacillus halotolerans strain XYK2-4     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1758081..1769331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8O67_RS09290 (AB8O67_09300) yfmH 1758173..1759459 (+) 1287 WP_059352923.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  AB8O67_RS09295 (AB8O67_09305) ymfI 1759512..1760240 (+) 729 WP_316274646.1 elongation factor P 5-aminopentanone reductase -
  AB8O67_RS09300 (AB8O67_09310) - 1760320..1760577 (+) 258 WP_044155842.1 DUF3243 domain-containing protein -
  AB8O67_RS09305 (AB8O67_09315) - 1760707..1761498 (+) 792 WP_024121452.1 YmfK family protein -
  AB8O67_RS09310 (AB8O67_09320) - 1761565..1762431 (+) 867 WP_229043071.1 RodZ family helix-turn-helix domain-containing protein -
  AB8O67_RS09315 (AB8O67_09325) pgsA 1762481..1763062 (+) 582 WP_010334305.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB8O67_RS09320 (AB8O67_09330) cinA 1763081..1764331 (+) 1251 WP_369888559.1 competence/damage-inducible protein A Machinery gene
  AB8O67_RS09325 (AB8O67_09335) recA 1764503..1765549 (+) 1047 WP_010334307.1 recombinase RecA Machinery gene
  AB8O67_RS09330 (AB8O67_09340) - 1765722..1766900 (+) 1179 WP_369888560.1 serine hydrolase domain-containing protein -
  AB8O67_RS09335 (AB8O67_09345) rny 1767187..1768749 (+) 1563 WP_010334309.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45516.82 Da        Isoelectric Point: 5.0594

>NTDB_id=1033194 AB8O67_RS09320 WP_369888559.1 1763081..1764331(+) (cinA) [Bacillus halotolerans strain XYK2-4]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDFIVFSGGLGPTKDDL
TKETIANVLGRPLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLTEHDSRFYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAVILERVGEFFYGYDDTSLVKELSKACKEKGITLSAAESFTGGLFSEWLTDLSGASVLFSGGVVCYSNEVKQNVLG
VKKETLDRFGAVSEECAFELAKGVQQLTGSDIGISFTGVAGPDTQEGHAPGHVFIGISANGKEEVHEFHFAGSRTGIRKR
AAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1033194 AB8O67_RS09320 WP_369888559.1 1763081..1764331(+) (cinA) [Bacillus halotolerans strain XYK2-4]
ATGGAATTTCCAAAAAAAGCAGAGATTATTGCAGTCGGTTCAGAGCTCTTACTTGGTCAGATTGCTAATACAAATGCTCA
ATTTATCAGCAAACAGCTGGCAGAAATCGGAGTAAACGTATTTTACCATACAGCAGTCGGTGATAATCCGGAGCGGCTGA
AGCAGGTCATCCGCATTGCTGAAGAGCGCTCTGATTTTATTGTTTTTTCAGGAGGGCTCGGACCGACAAAAGATGATTTA
ACAAAAGAAACGATAGCAAATGTGCTGGGACGCCCGCTCGTTTTAAATGATGAGGCGTTTCAATCCATTGAGGATTATTT
CAAACGAACAAAACGCACGATGTCACCTAATAACCGAAAACAGGCGCTTGTCATCGAAGGATCTGACGTACTGGCGAATC
ACTTTGGAATGGCGCCGGGAATGCTTACAGAGCATGATTCACGCTTTTATATGCTTCTTCCCGGGCCGCCGAGCGAATTG
CGTCCGATGTTTGAAAATGAGGCAAAACCGCTTCTTCTTAAAAAGATGGGCTCCAATGAAAAAATTGTATCAACTGTTCT
TCGCTTTTTCGGTATCGGCGAGTCTCAGCTTGAAGCTGATTTAGAAGATATCATTGATGCACAGACGAACCCGACGATCG
CTCCATTGGCAGCGGACGGAGAGGTGACGCTTCGCCTGACAGCAAAACATGCCGATGAAAAAGAAACAGAGCGTTTGTTA
AAAGAAACAGAAGCCGTTATTTTAGAACGTGTCGGTGAATTTTTCTATGGCTACGACGATACATCGCTTGTGAAAGAGCT
ATCTAAAGCATGTAAGGAAAAAGGCATCACGCTTTCTGCCGCAGAAAGCTTTACCGGCGGGCTGTTTTCTGAATGGCTGA
CAGACCTTAGCGGCGCTTCAGTATTGTTTTCCGGCGGCGTTGTTTGCTATTCAAACGAAGTGAAGCAAAATGTGCTCGGC
GTCAAAAAGGAAACATTGGACCGTTTCGGCGCAGTCAGCGAGGAGTGCGCATTTGAGCTCGCAAAGGGTGTTCAGCAGCT
CACTGGAAGCGATATTGGCATTAGCTTTACCGGTGTTGCCGGCCCTGATACTCAAGAAGGCCATGCACCTGGACATGTGT
TTATCGGTATTTCTGCAAACGGAAAAGAAGAGGTTCACGAGTTTCACTTTGCAGGCTCCAGAACAGGAATCAGAAAACGT
GCTGCTAAATATGGCTGCCATTTAATTTTAAAACTGTTAGAGCAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Competence-damaged protein (CinA)

(261-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

95.913

100

0.959
  cinA Streptococcus mutans UA159

47.215

99.279

0.469
  cinA Streptococcus mitis SK321

46.411

100

0.466
  cinA Streptococcus mitis NCTC 12261

46.411

100

0.466
  cinA Streptococcus pneumoniae TIGR4

46.172

100

0.464
  cinA Streptococcus pneumoniae Rx1

45.933

100

0.462
  cinA Streptococcus pneumoniae R6

45.933

100

0.462
  cinA Streptococcus pneumoniae D39

45.694

100

0.459
  cinA Streptococcus suis isolate S10

41.432

93.99

0.389

Multiple sequence alignment