Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   JNUCC21_RS08875 Genome accession   NZ_CP166019
Coordinates   1735876..1737126 (+) Length   416 a.a.
NCBI ID   WP_072589102.1    Uniprot ID   -
Organism   Bacillus sp. JNUCC-21     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1730876..1742126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC21_RS08845 (JNUCC21_08865) yfmH 1730960..1732246 (+) 1287 WP_072589100.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  JNUCC21_RS08850 (JNUCC21_08870) ymfI 1732306..1733034 (+) 729 WP_015239877.1 elongation factor P 5-aminopentanone reductase -
  JNUCC21_RS08855 (JNUCC21_08875) - 1733110..1733367 (+) 258 WP_003154150.1 DUF3243 domain-containing protein -
  JNUCC21_RS08860 (JNUCC21_08880) - 1733495..1734286 (+) 792 WP_007409819.1 YmfK family protein -
  JNUCC21_RS08865 (JNUCC21_08885) - 1734305..1735204 (+) 900 WP_072589101.1 RodZ domain-containing protein -
  JNUCC21_RS08870 (JNUCC21_08890) pgsA 1735277..1735858 (+) 582 WP_007409821.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JNUCC21_RS08875 (JNUCC21_08895) cinA 1735876..1737126 (+) 1251 WP_072589102.1 competence/damage-inducible protein A Machinery gene
  JNUCC21_RS08880 (JNUCC21_08900) recA 1737297..1738340 (+) 1044 WP_003154145.1 recombinase RecA Machinery gene
  JNUCC21_RS08885 (JNUCC21_08905) - 1738508..1739689 (+) 1182 WP_015239879.1 serine hydrolase -
  JNUCC21_RS08890 (JNUCC21_08910) rny 1739982..1741541 (+) 1560 WP_003154140.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 44938.25 Da        Isoelectric Point: 5.2503

>NTDB_id=1033117 JNUCC21_RS08875 WP_072589102.1 1735876..1737126(+) (cinA) [Bacillus sp. JNUCC-21]
MEIAKKAEIIAVGSELLLGQIANTNAQFISKELAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDLIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFRSIEEYFAKTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLAEHGSRLYMLLPGPPSEL
RPMFENEAKPLLLKKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAAILERVGEFFYGYDDTSLVKELSKACRQNGITISSAESFTGGLFSEWVTDLSGASQLFAGGVVCYSDSVKQHVLG
VKAETLAASGAVSKECAKELAAGVRKLTGSDIGISFTGVAGPDPQEGHAPGRVFIGIAAEGKEEVHEFNFAGSRTGIRKR
AAKYGCHLILKMLDQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1033117 JNUCC21_RS08875 WP_072589102.1 1735876..1737126(+) (cinA) [Bacillus sp. JNUCC-21]
ATGGAAATAGCAAAAAAAGCAGAAATCATTGCAGTCGGCTCGGAGCTTCTGCTAGGCCAGATCGCCAATACGAACGCGCA
GTTTATCAGTAAAGAGCTGGCGGAAATTGGTGTAAACGTGTTTTATCATACCGCTGTCGGTGACAATCCGGAGCGGCTTA
AGCAAGTCATCCGCATTGCCGAAGAGCGCTCAGACCTGATTATTTTTTCAGGCGGCCTCGGACCGACCAAGGACGATTTG
ACGAAAGAAACCATTGCAAACACACTGGGGCGCCCGCTCGTTCTGAATGACGAAGCGTTCCGGTCGATCGAAGAATATTT
CGCGAAAACAAAACGGACCATGTCGCCGAATAACCGCAAACAGGCGCTCGTCATTGAGGGCTCAGACGTTTTGGCGAATC
ATTTCGGCATGGCGCCGGGAATGCTTGCAGAGCACGGCTCAAGGCTTTATATGCTGCTTCCCGGGCCGCCGAGCGAGCTG
CGTCCGATGTTTGAAAATGAAGCGAAGCCGCTGCTTCTTAAAAAGCTCGGTTCTAATGAGAAAATCGTTTCAACCGTGCT
GCGGTTTTTCGGAATCGGTGAATCCCAGCTTGAAGCTGATTTAGAAGATATCATTGATGCGCAGACGAACCCGACGATTG
CGCCGCTTGCTGCTGACGGAGAGGTCACGCTGCGTTTAACGGCGAAACATGCTGACGAAAAAGAAACAGAACGGCTTTTA
AAAGAAACGGAAGCCGCCATTTTAGAACGTGTCGGTGAATTTTTCTACGGATATGATGATACGTCTCTGGTGAAGGAGCT
TTCAAAAGCATGCAGACAAAACGGAATTACGATTTCTTCTGCCGAAAGCTTTACAGGCGGCCTGTTTTCAGAGTGGGTGA
CTGATTTAAGCGGTGCGTCTCAACTATTTGCAGGGGGTGTTGTCTGTTATTCCGACAGCGTGAAACAGCATGTGCTCGGC
GTGAAAGCTGAGACGCTCGCAGCAAGCGGAGCGGTCAGCAAAGAGTGTGCGAAAGAGCTTGCAGCCGGTGTGAGAAAGCT
GACCGGAAGCGATATCGGCATCAGCTTTACCGGGGTGGCGGGTCCCGACCCGCAGGAAGGGCATGCGCCGGGCCGCGTCT
TTATCGGCATTGCGGCGGAAGGAAAAGAAGAGGTGCACGAATTTAACTTTGCCGGCTCAAGAACCGGAATCAGAAAGCGC
GCCGCTAAATACGGCTGCCATCTCATTTTGAAAATGCTGGATCAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(261-413)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

90.144

100

0.901
  cinA Streptococcus mitis NCTC 12261

47.847

100

0.481
  cinA Streptococcus mitis SK321

47.368

100

0.476
  cinA Streptococcus pneumoniae TIGR4

46.89

100

0.471
  cinA Streptococcus pneumoniae Rx1

46.89

100

0.471
  cinA Streptococcus pneumoniae R6

46.89

100

0.471
  cinA Streptococcus pneumoniae D39

46.651

100

0.469
  cinA Streptococcus mutans UA159

46.247

99.279

0.459
  cinA Streptococcus suis isolate S10

40.921

93.99

0.385

Multiple sequence alignment