Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AB8E30_RS09315 Genome accession   NZ_CP165965
Coordinates   1770794..1772032 (+) Length   412 a.a.
NCBI ID   WP_369903050.1    Uniprot ID   -
Organism   Bacillus manliponensis strain jeju3-1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1765794..1777032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8E30_RS09285 (AB8E30_09290) yfmH 1765795..1767081 (+) 1287 WP_369903045.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  AB8E30_RS09290 (AB8E30_09295) ymfI 1767103..1767816 (+) 714 WP_369903046.1 elongation factor P 5-aminopentanone reductase -
  AB8E30_RS09295 (AB8E30_09300) - 1767917..1768165 (+) 249 WP_369903047.1 DUF3243 domain-containing protein -
  AB8E30_RS09300 (AB8E30_09305) - 1768301..1769086 (+) 786 WP_369903503.1 DUF3388 domain-containing protein -
  AB8E30_RS09305 (AB8E30_09310) - 1769108..1770130 (+) 1023 WP_369903048.1 RodZ domain-containing protein -
  AB8E30_RS09310 (AB8E30_09315) pgsA 1770194..1770772 (+) 579 WP_369903049.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB8E30_RS09315 (AB8E30_09320) cinA 1770794..1772032 (+) 1239 WP_369903050.1 competence/damage-inducible protein A Machinery gene
  AB8E30_RS09320 (AB8E30_09325) recA 1772182..1772790 (+) 609 Protein_1787 recombinase RecA -
  AB8E30_RS09325 (AB8E30_09330) - 1773119..1773535 (+) 417 Protein_1788 DNA recombination/repair protein RecA -
  AB8E30_RS09330 (AB8E30_09335) rny 1773846..1775408 (+) 1563 WP_369903051.1 ribonuclease Y -
  AB8E30_RS09335 (AB8E30_09340) - 1775697..1776491 (+) 795 WP_034635660.1 TIGR00282 family metallophosphoesterase -
  AB8E30_RS09340 (AB8E30_09345) spoVS 1776641..1776901 (+) 261 WP_034635659.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45581.01 Da        Isoelectric Point: 5.0218

>NTDB_id=1032640 AB8E30_RS09315 WP_369903050.1 1770794..1772032(+) (cinA) [Bacillus manliponensis strain jeju3-1]
MNAEIIAVGTELLLGQITNTNAKFLSEKLAEIGIHVYYHTVVGDNKYRLQQAIEIAEKRADILIFTGGLGPTKDDLTKET
IARSLGEELIYDEAALASIANYFQKTGREFTENNKKQALVLNASTVFTNDHGMAPGMGLCKNEKVYILLPGPPKEMNPMY
IQYVEPFLRNVTTGENLYSRVLRFFGIGESQLEDKLQDIIDKQTNPTIAPLASEGEVTLRLTARHNDEKEAEKLINEVEG
LILQRVGQFFYGYNQEFLHHKVIMLLKQKNITLSCAESLTGGLFGNQIVENSGVSSIFNGGIICYNNDIKERILNVSKEL
LQSNGAVSEECAAVLAENVRKLMGSHIGISFTGVAGPGSSEGKDAGTVYIGLAIEGVETEVFPLVLSGSRQQIRERAVKY
GFYHLYKELEEM

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=1032640 AB8E30_RS09315 WP_369903050.1 1770794..1772032(+) (cinA) [Bacillus manliponensis strain jeju3-1]
ATGAATGCAGAAATTATTGCGGTTGGTACAGAACTTTTGCTTGGACAGATTACAAATACAAATGCGAAATTTTTATCAGA
GAAGTTAGCTGAAATCGGAATTCACGTGTACTACCATACGGTTGTAGGTGACAACAAATATCGTTTACAGCAAGCGATTG
AAATTGCTGAAAAACGAGCTGATATTTTAATCTTTACAGGCGGATTAGGACCAACGAAAGATGATTTAACAAAAGAAACA
ATTGCGCGATCTCTCGGTGAAGAATTGATATATGATGAAGCTGCGCTCGCCTCAATTGCTAATTATTTTCAAAAAACAGG
TCGTGAGTTTACAGAAAATAACAAGAAACAAGCACTTGTGTTAAATGCATCTACTGTATTTACAAATGATCACGGTATGG
CGCCTGGGATGGGGTTATGTAAAAATGAAAAAGTGTACATTTTACTACCAGGACCGCCAAAAGAAATGAATCCGATGTAT
ATACAGTACGTTGAGCCATTTTTACGTAATGTAACAACTGGGGAAAACTTGTATTCACGTGTTCTTCGCTTTTTTGGAAT
TGGAGAATCACAATTGGAAGATAAACTTCAAGATATTATTGATAAACAAACAAATCCAACGATTGCACCGCTTGCATCAG
AAGGAGAAGTGACACTTCGTTTAACGGCTCGGCATAATGATGAGAAGGAAGCAGAGAAACTTATTAATGAAGTAGAAGGA
TTGATTTTACAAAGAGTAGGTCAATTTTTCTATGGATATAATCAAGAGTTCCTTCATCATAAAGTTATTATGTTATTGAA
ACAAAAGAATATAACTCTTTCTTGCGCAGAAAGCTTAACAGGCGGCTTGTTTGGAAATCAAATTGTAGAGAATAGCGGTG
TTTCCTCTATATTTAACGGTGGAATCATCTGTTATAACAATGATATAAAAGAACGCATTTTGAACGTATCAAAAGAGTTA
TTACAATCAAATGGTGCTGTTAGTGAAGAATGTGCTGCTGTTCTTGCTGAAAATGTAAGAAAGCTAATGGGCTCACATAT
TGGTATAAGTTTTACAGGTGTAGCAGGGCCCGGATCTTCGGAAGGGAAGGATGCTGGGACGGTTTATATTGGACTGGCAA
TAGAAGGTGTGGAAACAGAAGTTTTCCCACTTGTATTAAGTGGGAGTCGCCAACAAATACGTGAGCGTGCAGTGAAGTAT
GGATTTTATCATTTATATAAAGAGCTAGAAGAGATGTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Competence-damaged protein (CinA)

(257-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

56.829

99.515

0.566
  cinA Streptococcus mitis SK321

47.255

100

0.481
  cinA Streptococcus pneumoniae TIGR4

46.539

100

0.473
  cinA Streptococcus mitis NCTC 12261

46.539

100

0.473
  cinA Streptococcus pneumoniae Rx1

46.301

100

0.471
  cinA Streptococcus pneumoniae R6

46.301

100

0.471
  cinA Streptococcus pneumoniae D39

46.062

100

0.468
  cinA Streptococcus mutans UA159

45.567

98.544

0.449
  cinA Streptococcus suis isolate S10

41.91

91.505

0.383

Multiple sequence alignment