Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AB8E34_RS15165 Genome accession   NZ_CP165964
Coordinates   3301800..3303023 (-) Length   407 a.a.
NCBI ID   WP_369958749.1    Uniprot ID   -
Organism   Pseudomonas benzenivorans strain jeju3-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3296800..3308023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8E34_RS15130 (AB8E34_15090) - 3297598..3297771 (-) 174 WP_318643453.1 DUF3094 family protein -
  AB8E34_RS15135 (AB8E34_15095) - 3297852..3298346 (-) 495 WP_369958744.1 MOSC domain-containing protein -
  AB8E34_RS15140 (AB8E34_15100) - 3298343..3298972 (-) 630 WP_318643449.1 DUF1780 domain-containing protein -
  AB8E34_RS15145 (AB8E34_15105) - 3299215..3299898 (+) 684 WP_369958745.1 energy-coupling factor ABC transporter permease -
  AB8E34_RS15150 (AB8E34_15110) yacG 3299958..3300158 (-) 201 WP_369958746.1 DNA gyrase inhibitor YacG -
  AB8E34_RS15155 (AB8E34_15115) coaE 3300155..3300763 (-) 609 WP_369958747.1 dephospho-CoA kinase -
  AB8E34_RS15160 (AB8E34_15120) pilD 3300924..3301796 (-) 873 WP_369958748.1 A24 family peptidase Machinery gene
  AB8E34_RS15165 (AB8E34_15125) pilC 3301800..3303023 (-) 1224 WP_369958749.1 type II secretion system F family protein Machinery gene
  AB8E34_RS15170 (AB8E34_15130) pilB 3303027..3304733 (-) 1707 WP_369958750.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AB8E34_RS15175 (AB8E34_15135) - 3304957..3305065 (+) 109 Protein_2965 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  AB8E34_RS15180 (AB8E34_15140) - 3305652..3305747 (+) 96 Protein_2966 transposase -
  AB8E34_RS15185 (AB8E34_15145) - 3305839..3306234 (+) 396 WP_369958751.1 nucleotidyltransferase domain-containing protein -
  AB8E34_RS15190 (AB8E34_15150) - 3306224..3306658 (+) 435 WP_369958752.1 DUF86 domain-containing protein -
  AB8E34_RS15195 (AB8E34_15155) nadC 3306727..3307575 (-) 849 WP_369958753.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44437.10 Da        Isoelectric Point: 9.8361

>NTDB_id=1032604 AB8E34_RS15165 WP_369958749.1 3301800..3303023(-) (pilC) [Pseudomonas benzenivorans strain jeju3-2]
MAEKALKTSVFSWEGKDRKGAIVKGELSGQNPALVKAQLRKQGINPTKVRKKAASLFNAGKKIRPLDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPNMRKLVDSLKQEVAAGNSFAASLRKQPQYFDDLYCNLVDSGEQSGALETLLDRVATYKEKT
EALKAKIKKAMTYPIAVIVVAVIVTAILLIKVVPAFESVFKGFGAELPAFTQMVVGLSYALQEWWFIVLLGLFAFAYVFK
ETHRRSEKFRNFLDRSLLKLPIIGDILYKSSVARYARTLSTTFAAGVPLVDALDSVSGATGNVVFKNAVNKIKQDVSSGT
QLNFSMRTVGIFPSMAVQMTAIGEESGALDEMLSKVATYYEDEVDNLVDNLATLMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGNVVGG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=1032604 AB8E34_RS15165 WP_369958749.1 3301800..3303023(-) (pilC) [Pseudomonas benzenivorans strain jeju3-2]
ATGGCGGAAAAAGCACTCAAGACCAGCGTGTTCAGCTGGGAAGGCAAAGACAGAAAAGGCGCCATAGTCAAGGGGGAGCT
CAGCGGGCAGAACCCCGCATTGGTAAAAGCGCAACTGCGCAAGCAGGGCATCAACCCGACCAAGGTGCGCAAGAAGGCCG
CCTCGCTATTCAATGCCGGCAAGAAGATCAGGCCACTGGACATCGCCCTGTTCACCCGGCAGATGGCCACCATGATGAAG
GCCGGCGTACCCCTGCTGCAATCCTTCGACATCATCGGCGAAGGCTTCGACAACCCCAATATGCGCAAGCTGGTGGACAG
CCTCAAACAGGAGGTGGCAGCAGGCAATTCCTTTGCGGCCTCCCTGCGCAAGCAGCCGCAATACTTCGATGATCTCTATT
GCAACCTGGTGGACTCTGGCGAACAGTCAGGCGCACTAGAAACCCTGCTGGATCGCGTCGCCACCTACAAGGAGAAGACC
GAGGCACTCAAGGCCAAGATCAAGAAGGCAATGACCTATCCCATCGCAGTTATCGTGGTTGCCGTCATCGTCACCGCCAT
TCTGCTGATAAAGGTCGTCCCGGCATTCGAAAGCGTATTCAAAGGCTTCGGCGCCGAGCTTCCTGCCTTCACGCAGATGG
TCGTGGGACTCTCGTACGCCTTGCAGGAGTGGTGGTTTATCGTACTTCTTGGCCTGTTTGCCTTTGCATATGTCTTTAAG
GAAACACATAGACGCTCAGAGAAGTTCCGCAACTTTCTCGACCGCTCGCTGCTCAAGCTGCCGATTATCGGCGACATTCT
CTACAAGTCCTCAGTTGCGCGCTATGCGAGGACCCTGTCCACCACCTTCGCCGCGGGCGTACCCCTGGTCGATGCCCTGG
ACTCGGTTTCCGGCGCCACCGGCAATGTGGTTTTCAAGAATGCCGTAAACAAGATCAAGCAAGACGTCTCCAGCGGCACT
CAACTCAACTTCTCGATGCGTACCGTCGGAATATTCCCGAGCATGGCCGTTCAGATGACCGCGATCGGTGAGGAGTCGGG
CGCATTGGACGAGATGCTGAGCAAGGTCGCGACCTACTACGAGGACGAAGTGGACAACCTGGTCGACAACCTGGCCACCC
TGATGGAACCCATGATCATGGCCGTGCTCGGCGTACTGGTCGGCGGCCTGATCATCGCCATGTACCTGCCGATCTTCCAG
CTGGGTAACGTAGTAGGTGGGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

83.704

99.509

0.833
  pilC Acinetobacter baylyi ADP1

61.33

99.754

0.612
  pilC Acinetobacter baumannii D1279779

60.988

99.509

0.607
  pilC Legionella pneumophila strain ERS1305867

52.778

97.297

0.514
  pilG Neisseria gonorrhoeae MS11

44.279

98.771

0.437
  pilG Neisseria meningitidis 44/76-A

44.279

98.771

0.437
  pilC Vibrio cholerae strain A1552

41.133

99.754

0.41
  pilC Vibrio campbellii strain DS40M4

40.554

97.543

0.396

Multiple sequence alignment