Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   CKV94_RS06315 Genome accession   NZ_LT906482
Coordinates   1253295..1253768 (+) Length   157 a.a.
NCBI ID   WP_003823862.1    Uniprot ID   -
Organism   Eikenella corrodens strain NCTC10596     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1248295..1258768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV94_RS06300 (SAMEA4412678_01235) - 1249288..1250853 (-) 1566 WP_003823857.1 serine/threonine-protein kinase -
  CKV94_RS06305 (SAMEA4412678_01236) - 1251297..1252775 (+) 1479 WP_003823859.1 mechanosensitive ion channel family protein -
  CKV94_RS06310 (SAMEA4412678_01237) nudB 1252772..1253257 (+) 486 WP_003823861.1 dihydroneopterin triphosphate diphosphatase -
  CKV94_RS06315 (SAMEA4412678_01238) cinA 1253295..1253768 (+) 474 WP_003823862.1 nicotinamide-nucleotide amidase Machinery gene
  CKV94_RS06320 (SAMEA4412678_01239) - 1254112..1254474 (-) 363 WP_003823863.1 hypothetical protein -
  CKV94_RS06325 (SAMEA4412678_01240) dcd 1254538..1255104 (-) 567 WP_003823864.1 dCTP deaminase -
  CKV94_RS06330 (SAMEA4412678_01241) - 1255236..1256135 (-) 900 WP_003823866.1 recombination-associated protein RdgC -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17081.38 Da        Isoelectric Point: 6.2317

>NTDB_id=1032043 CKV94_RS06315 WP_003823862.1 1253295..1253768(+) (cinA) [Eikenella corrodens strain NCTC10596]
MDTLLQEVTQQLAQRGETITCAESCTGGLLAAALTRLPGSSAWFETGFVTYSNHAKQQLLNVNAATLSHYGAVSEETVRE
MALGALIATKADYAISISGIAGPDGGSEDKPVGTVWFSLATKQRIWAKEQHFEGDREAVRNQAVRFALMLMKKYLER

Nucleotide


Download         Length: 474 bp        

>NTDB_id=1032043 CKV94_RS06315 WP_003823862.1 1253295..1253768(+) (cinA) [Eikenella corrodens strain NCTC10596]
ATGGATACCCTGCTGCAAGAAGTTACCCAACAACTCGCCCAACGCGGCGAAACCATCACCTGCGCCGAATCCTGCACCGG
CGGCCTGCTTGCCGCCGCACTCACCCGCCTGCCCGGCAGCTCCGCCTGGTTTGAAACCGGCTTCGTCACCTACAGCAACC
ACGCCAAACAGCAGCTCCTCAACGTGAACGCCGCCACCCTCAGCCACTACGGCGCGGTAAGCGAAGAAACCGTGCGCGAA
ATGGCTCTGGGCGCGCTCATCGCCACCAAGGCTGATTACGCAATTAGCATCTCCGGCATCGCCGGCCCCGACGGCGGCAG
CGAAGACAAACCCGTGGGCACGGTTTGGTTCAGCCTCGCCACCAAACAGCGCATCTGGGCCAAAGAGCAGCACTTCGAAG
GCGACCGCGAAGCCGTACGCAACCAAGCCGTGCGCTTTGCCCTGATGCTGATGAAAAAGTATTTGGAGCGATAG

Domains

Predicted by InterProScan.

Competence-damaged protein (CinA)

(3-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae R36A

41.611

94.904

0.395
  cinA Streptococcus pneumoniae Rx1

41.611

94.904

0.395
  cinA Streptococcus pneumoniae R6

41.611

94.904

0.395
  cinA Streptococcus pneumoniae D39

41.611

94.904

0.395
  cinA Streptococcus pneumoniae TIGR4

40.94

94.904

0.389
  cinA Streptococcus mutans UA159

39.355

98.726

0.389
  cinA Streptococcus mitis NCTC 12261

40.268

94.904

0.382
  cinA Streptococcus mitis SK321

39.597

94.904

0.376
  cinA Bacillus subtilis subsp. subtilis str. 168

36.774

98.726

0.363