Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AB7T04_RS08540 Genome accession   NZ_CP165780
Coordinates   1671023..1672273 (+) Length   416 a.a.
NCBI ID   WP_166706283.1    Uniprot ID   -
Organism   Bacillus velezensis strain L-15     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1666023..1677273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB7T04_RS08510 (AB7T04_08510) yfmH 1666107..1667393 (+) 1287 WP_071391821.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  AB7T04_RS08515 (AB7T04_08515) ymfI 1667452..1668180 (+) 729 WP_071391820.1 elongation factor P 5-aminopentanone reductase -
  AB7T04_RS08520 (AB7T04_08520) - 1668256..1668513 (+) 258 WP_003154150.1 DUF3243 domain-containing protein -
  AB7T04_RS08525 (AB7T04_08525) - 1668641..1669432 (+) 792 WP_003154149.1 YmfK family protein -
  AB7T04_RS08530 (AB7T04_08530) - 1669451..1670350 (+) 900 WP_071391819.1 RodZ domain-containing protein -
  AB7T04_RS08535 (AB7T04_08535) pgsA 1670424..1671005 (+) 582 WP_003154147.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB7T04_RS08540 (AB7T04_08540) cinA 1671023..1672273 (+) 1251 WP_166706283.1 competence/damage-inducible protein A Machinery gene
  AB7T04_RS08545 (AB7T04_08545) recA 1672444..1673487 (+) 1044 WP_060675476.1 recombinase RecA Machinery gene
  AB7T04_RS08550 (AB7T04_08550) - 1673655..1674836 (+) 1182 WP_003154142.1 serine hydrolase -
  AB7T04_RS08555 (AB7T04_08555) rny 1675129..1676688 (+) 1560 WP_003154140.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45034.38 Da        Isoelectric Point: 5.5251

>NTDB_id=1031726 AB7T04_RS08540 WP_166706283.1 1671023..1672273(+) (cinA) [Bacillus velezensis strain L-15]
MEIAKKAEIIAVGSELLLGQIANTNAQFISKELAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDLIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFRSIEEYFAKTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLAGHGSRLYMLLPGPPSEL
RPMFENEAKPLLLKKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAAILERVGEFFYGYDDTSLVKELSKACRQNKITISSAESFTGGLFSEWVTDLSGASQLFAGGVVCYSDSVKQHVLG
VKAETLAESGAVSKECAKELAAGVRKLTGSDIGISFTGVAGPDPQEGHAPGRVFIGISAEGKEEVHEFHFAGSRTGIRKR
AAKYGCHLILKMLDQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1031726 AB7T04_RS08540 WP_166706283.1 1671023..1672273(+) (cinA) [Bacillus velezensis strain L-15]
ATGGAAATAGCAAAAAAAGCAGAAATCATTGCGGTCGGCTCGGAGCTTCTGCTCGGCCAGATCGCCAATACGAACGCGCA
GTTTATCAGTAAAGAGCTGGCGGAAATCGGTGTAAACGTGTTTTACCATACCGCTGTCGGTGACAATCCGGAGCGGCTTA
AGCAAGTCATCCGCATTGCCGAAGAGCGCTCAGATCTGATTATTTTTTCAGGCGGCCTCGGACCGACCAAGGACGATTTA
ACGAAAGAAACCATTGCAAACACACTGGGGCGCCCGCTCGTTCTGAATGACGAAGCGTTCCGGTCGATCGAAGAATATTT
CGCGAAAACAAAACGGACCATGTCGCCGAATAACCGCAAACAGGCGCTCGTCATTGAGGGCTCGGACGTTTTGGCGAATC
ATTTCGGCATGGCGCCGGGAATGCTTGCAGGGCACGGCTCAAGGCTTTATATGCTGCTTCCCGGACCGCCGAGCGAGCTG
CGTCCGATGTTTGAAAATGAAGCGAAGCCGCTGCTTCTTAAAAAGCTCGGTTCTAATGAGAAAATCGTTTCAACCGTGCT
GCGTTTTTTCGGAATCGGTGAATCCCAGCTTGAAGCTGATTTAGAAGATATCATTGACGCGCAGACGAATCCGACGATTG
CGCCGCTTGCTGCTGACGGCGAGGTTACGCTGCGTTTAACGGCGAAACATGCTGACGAAAAAGAAACAGAACGGCTTTTA
AAAGAAACGGAAGCCGCCATTTTAGAACGTGTCGGTGAATTTTTCTACGGATATGATGATACGTCCCTGGTGAAGGAGCT
TTCAAAAGCATGCAGACAAAACAAAATCACGATTTCTTCTGCCGAAAGCTTTACAGGCGGCCTGTTTTCAGAGTGGGTGA
CTGATTTAAGCGGTGCGTCTCAACTATTTGCAGGGGGCGTTGTCTGCTATTCCGACAGCGTGAAACAGCATGTGCTCGGC
GTGAAAGCTGAGACGCTCGCAGAAAGCGGAGCGGTCAGCAAAGAGTGTGCGAAAGAGCTTGCAGCCGGTGTGAGAAAGCT
GACCGGAAGCGATATCGGCATCAGCTTTACCGGGGTTGCGGGTCCCGACCCGCAGGAAGGGCATGCGCCGGGCCGCGTCT
TTATCGGCATTTCAGCGGAAGGAAAAGAAGAGGTGCACGAATTTCACTTTGCCGGCTCAAGAACCGGAATCAGAAAGCGC
GCCGCTAAATACGGCTGCCATCTCATTTTAAAAATGCTGGATCAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(261-413)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

90.144

100

0.901
  cinA Streptococcus mitis NCTC 12261

47.129

100

0.474
  cinA Streptococcus mitis SK321

46.651

100

0.469
  cinA Streptococcus pneumoniae TIGR4

46.172

100

0.464
  cinA Streptococcus pneumoniae Rx1

46.172

100

0.464
  cinA Streptococcus pneumoniae R6

46.172

100

0.464
  cinA Streptococcus pneumoniae D39

45.933

100

0.462
  cinA Streptococcus mutans UA159

46.005

99.279

0.457
  cinA Streptococcus suis isolate S10

40.665

93.99

0.382

Multiple sequence alignment