Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AB8S08_RS01835 Genome accession   NZ_CP165718
Coordinates   389072..390298 (-) Length   408 a.a.
NCBI ID   WP_369743240.1    Uniprot ID   A0AB39XAS7
Organism   Pseudidiomarina sp. PP-1MA     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 384072..395298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8S08_RS01815 (AB8S08_01815) mutT 386323..386721 (+) 399 WP_369743234.1 8-oxo-dGTP diphosphatase MutT -
  AB8S08_RS01820 (AB8S08_01820) zapD 386767..387531 (-) 765 WP_369743235.1 cell division protein ZapD -
  AB8S08_RS01825 (AB8S08_01825) coaE 387563..388186 (-) 624 WP_369743237.1 dephospho-CoA kinase -
  AB8S08_RS01830 (AB8S08_01830) - 388187..389071 (-) 885 WP_369743239.1 A24 family peptidase -
  AB8S08_RS01835 (AB8S08_01835) pilC 389072..390298 (-) 1227 WP_369743240.1 type II secretion system F family protein Machinery gene
  AB8S08_RS01840 (AB8S08_01840) pilB 390349..392046 (-) 1698 WP_153826419.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AB8S08_RS01845 (AB8S08_01845) - 392134..392625 (-) 492 WP_369743241.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  AB8S08_RS01850 (AB8S08_01850) nadC 393016..393882 (-) 867 WP_369743242.1 carboxylating nicotinate-nucleotide diphosphorylase -
  AB8S08_RS01855 (AB8S08_01855) ampD 394059..394610 (+) 552 WP_369744172.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44589.28 Da        Isoelectric Point: 9.7377

>NTDB_id=1031319 AB8S08_RS01835 WP_369743240.1 389072..390298(-) (pilC) [Pseudidiomarina sp. PP-1MA]
MASTTKAMKDITEFEWTGINRRGKRIKGVMRADNDRMVRANLRSQGVTPRTIKKKRKPLFGGKNITGADVAIFTRQIATM
LGAQVPLLQSLEMVAKGSENPKIRELMQDLANQTAAGAPFASSLRQHPRVFDDLYCDLVESGEQSGNLENIFDRIATYRE
KSEALKAKIKKALVYPASVIVVALVVTVILLVYVVPQFEAVFKDFGAELPAMTQFVVTLSEIVQAYFLYVAAAIFVGAWL
FKRAYNKSLALRDRVDLLSLKIPVIKDILNKAAVARFAQTLSTTFAAGVPLISALDSAAGASGNALYRDAILRIRDEVTS
GMQMNTAMQAQDVFPTLAVQMVFIGEEAGKLDDMLSKVASIYEREVDDLVDNLTALLEPMIMVVIGGLVGGLIVAMYLPI
FSLGKVVG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=1031319 AB8S08_RS01835 WP_369743240.1 389072..390298(-) (pilC) [Pseudidiomarina sp. PP-1MA]
ATGGCAAGCACAACAAAAGCCATGAAAGATATCACCGAGTTTGAATGGACCGGGATTAACCGTCGCGGCAAGCGCATTAA
AGGCGTGATGCGTGCTGATAATGACCGAATGGTGCGGGCTAACTTGCGTAGCCAAGGGGTCACCCCCAGAACCATCAAGA
AAAAGCGTAAGCCGCTATTTGGCGGTAAAAACATTACCGGCGCCGACGTGGCGATTTTTACTCGACAAATCGCAACCATG
TTAGGTGCGCAAGTTCCCCTATTGCAATCCTTAGAGATGGTGGCAAAAGGCTCCGAGAACCCCAAAATTCGTGAGTTGAT
GCAAGATCTCGCCAACCAAACCGCGGCAGGGGCACCTTTTGCGAGTTCACTGCGCCAGCATCCACGGGTGTTTGATGATC
TTTATTGTGATCTGGTTGAATCAGGTGAGCAGTCAGGTAACCTCGAGAATATTTTTGACCGCATCGCAACTTACCGCGAA
AAATCCGAAGCACTCAAGGCTAAAATCAAGAAAGCCTTGGTGTATCCCGCCTCGGTGATTGTGGTGGCCTTGGTGGTTAC
CGTGATCTTGCTGGTGTATGTGGTGCCACAGTTTGAAGCCGTATTTAAAGACTTTGGGGCAGAGCTGCCCGCCATGACCC
AGTTTGTGGTCACTTTAAGCGAAATTGTACAAGCCTATTTTTTATATGTTGCAGCCGCGATTTTTGTCGGTGCTTGGCTG
TTTAAGCGCGCCTACAATAAGAGTTTGGCGCTACGCGACCGAGTGGATCTGCTGTCACTCAAAATCCCCGTCATCAAAGA
CATTCTAAATAAAGCTGCGGTGGCGCGATTTGCTCAAACTCTGTCGACCACCTTTGCCGCTGGGGTGCCCTTGATCAGTG
CCCTCGACTCTGCCGCTGGAGCCTCAGGTAATGCCCTCTACCGCGATGCTATTTTGCGGATCCGCGATGAGGTGACCTCA
GGCATGCAGATGAACACGGCCATGCAAGCTCAAGATGTGTTCCCTACGTTAGCGGTACAAATGGTGTTTATCGGCGAAGA
AGCCGGTAAGTTAGACGATATGTTAAGCAAAGTTGCCTCAATTTATGAGCGCGAAGTCGACGACCTGGTAGATAATCTTA
CGGCCTTATTAGAGCCGATGATCATGGTGGTTATTGGTGGTTTGGTGGGTGGCTTGATTGTAGCCATGTATCTGCCGATC
TTTAGTTTAGGTAAGGTGGTTGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(73-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.673

99.02

0.571
  pilC Acinetobacter baylyi ADP1

52.141

97.304

0.507
  pilC Acinetobacter baumannii D1279779

52.141

97.304

0.507
  pilC Legionella pneumophila strain ERS1305867

51.01

97.059

0.495
  pilC Vibrio cholerae strain A1552

44.5

98.039

0.436
  pilC Vibrio campbellii strain DS40M4

42.786

98.529

0.422
  pilG Neisseria meningitidis 44/76-A

40.365

94.118

0.38
  pilG Neisseria gonorrhoeae MS11

40.365

94.118

0.38

Multiple sequence alignment