Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | AB7I05_RS03685 | Genome accession | NZ_CP165604 |
| Coordinates | 723178..723627 (+) | Length | 149 a.a. |
| NCBI ID | WP_005694367.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain Rd-KW20 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 718178..728627
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB7I05_RS03665 (AB7I05_03665) | rsmE | 718637..719374 (-) | 738 | WP_005694361.1 | 16S rRNA (uracil(1498)-N(3))-methyltransferase | - |
| AB7I05_RS03670 (AB7I05_03670) | lnt | 719424..720953 (-) | 1530 | WP_010868973.1 | apolipoprotein N-acyltransferase | - |
| AB7I05_RS03675 (AB7I05_03675) | corC | 720976..721875 (-) | 900 | WP_005694364.1 | CNNM family magnesium/cobalt transport protein CorC | - |
| AB7I05_RS03680 (AB7I05_03680) | ampD | 722508..723062 (-) | 555 | WP_005694366.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| AB7I05_RS03685 (AB7I05_03685) | pilA | 723178..723627 (+) | 450 | WP_005694367.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| AB7I05_RS03690 (AB7I05_03690) | pilB | 723624..725018 (+) | 1395 | WP_005694368.1 | GspE/PulE family protein | Machinery gene |
| AB7I05_RS03695 (AB7I05_03695) | pilC | 725015..726235 (+) | 1221 | WP_005694369.1 | type II secretion system F family protein | Machinery gene |
| AB7I05_RS03700 (AB7I05_03700) | pilD | 726232..726924 (+) | 693 | WP_005694370.1 | A24 family peptidase | Machinery gene |
| AB7I05_RS03705 (AB7I05_03705) | rho | 726978..728240 (-) | 1263 | WP_005648966.1 | transcription termination factor Rho | - |
Sequence
Protein
Download Length: 149 a.a. Molecular weight: 15509.02 Da Isoelectric Point: 9.1085
>NTDB_id=1030757 AB7I05_RS03685 WP_005694367.1 723178..723627(+) (pilA) [Haemophilus influenzae strain Rd-KW20]
MKLTTLQTLKKGFTLIELMIVIAIIAILATIAIPSYQNYTKKAAVSELLQASAPYKADVELCVYSTNETTSCTGGKNGIA
ADIKTAKGYVASVITQSGGITVKGNGTLANMEYILQAKGNAAAGVTWTTTCKGTDASLFPANFCGSVTK
MKLTTLQTLKKGFTLIELMIVIAIIAILATIAIPSYQNYTKKAAVSELLQASAPYKADVELCVYSTNETTSCTGGKNGIA
ADIKTAKGYVASVITQSGGITVKGNGTLANMEYILQAKGNAAAGVTWTTTCKGTDASLFPANFCGSVTK
Nucleotide
Download Length: 450 bp
>NTDB_id=1030757 AB7I05_RS03685 WP_005694367.1 723178..723627(+) (pilA) [Haemophilus influenzae strain Rd-KW20]
ATGAAATTAACAACACTGCAAACCTTGAAAAAAGGGTTTACATTAATCGAGCTAATGATTGTGATTGCAATTATTGCTAT
TTTAGCCACCATCGCAATTCCTTCTTATCAAAATTATACCAAAAAAGCTGCGGTATCCGAATTACTGCAAGCGTCTGCGC
CTTATAAGGCTGATGTGGAATTATGTGTATATAGCACAAATGAAACAACAAGCTGTACAGGGGGAAAAAATGGTATTGCA
GCGGATATAAAGACAGCAAAAGGCTATGTAGCCTCAGTTATCACTCAATCAGGTGGTATTACAGTAAAAGGGAATGGCAC
ATTGGCAAATATGGAATATATTTTGCAAGCTAAAGGTAATGCTGCAGCAGGTGTAACTTGGACAACAACCTGCAAAGGAA
CGGATGCCTCTTTATTTCCAGCAAATTTTTGCGGAAGTGTCACAAAATGA
ATGAAATTAACAACACTGCAAACCTTGAAAAAAGGGTTTACATTAATCGAGCTAATGATTGTGATTGCAATTATTGCTAT
TTTAGCCACCATCGCAATTCCTTCTTATCAAAATTATACCAAAAAAGCTGCGGTATCCGAATTACTGCAAGCGTCTGCGC
CTTATAAGGCTGATGTGGAATTATGTGTATATAGCACAAATGAAACAACAAGCTGTACAGGGGGAAAAAATGGTATTGCA
GCGGATATAAAGACAGCAAAAGGCTATGTAGCCTCAGTTATCACTCAATCAGGTGGTATTACAGTAAAAGGGAATGGCAC
ATTGGCAAATATGGAATATATTTTGCAAGCTAAAGGTAATGCTGCAGCAGGTGTAACTTGGACAACAACCTGCAAAGGAA
CGGATGCCTCTTTATTTCCAGCAAATTTTTGCGGAAGTGTCACAAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae Rd KW20 |
100 |
100 |
1 |
| pilA | Haemophilus influenzae 86-028NP |
91.946 |
100 |
0.919 |
| pilA | Glaesserella parasuis strain SC1401 |
55.034 |
100 |
0.55 |
| pilA2 | Legionella pneumophila str. Paris |
42.446 |
93.289 |
0.396 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
41.727 |
93.289 |
0.389 |
| pilA | Vibrio campbellii strain DS40M4 |
39.716 |
94.631 |
0.376 |