Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AB7I05_RS03695 Genome accession   NZ_CP165604
Coordinates   725015..726235 (+) Length   406 a.a.
NCBI ID   WP_005694369.1    Uniprot ID   -
Organism   Haemophilus influenzae strain Rd-KW20     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 720015..731235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB7I05_RS03675 (AB7I05_03675) corC 720976..721875 (-) 900 WP_005694364.1 CNNM family magnesium/cobalt transport protein CorC -
  AB7I05_RS03680 (AB7I05_03680) ampD 722508..723062 (-) 555 WP_005694366.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  AB7I05_RS03685 (AB7I05_03685) pilA 723178..723627 (+) 450 WP_005694367.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  AB7I05_RS03690 (AB7I05_03690) pilB 723624..725018 (+) 1395 WP_005694368.1 GspE/PulE family protein Machinery gene
  AB7I05_RS03695 (AB7I05_03695) pilC 725015..726235 (+) 1221 WP_005694369.1 type II secretion system F family protein Machinery gene
  AB7I05_RS03700 (AB7I05_03700) pilD 726232..726924 (+) 693 WP_005694370.1 A24 family peptidase Machinery gene
  AB7I05_RS03705 (AB7I05_03705) rho 726978..728240 (-) 1263 WP_005648966.1 transcription termination factor Rho -
  AB7I05_RS03710 (AB7I05_03710) metJ 728487..728804 (+) 318 WP_005631186.1 met regulon transcriptional regulator MetJ -
  AB7I05_RS03715 (AB7I05_03715) cueR 728818..729204 (-) 387 WP_005654127.1 Cu(I)-responsive transcriptional regulator -
  AB7I05_RS03720 (AB7I05_03720) - 729281..729487 (+) 207 WP_005631184.1 heavy-metal-associated domain-containing protein -
  AB7I05_RS03725 (AB7I05_03725) - 729562..729768 (+) 207 WP_005656255.1 heavy-metal-associated domain-containing protein -
  AB7I05_RS03730 (AB7I05_03730) - 729842..730048 (+) 207 WP_005656255.1 heavy-metal-associated domain-containing protein -
  AB7I05_RS03735 (AB7I05_03735) - 730123..730329 (+) 207 WP_005656255.1 heavy-metal-associated domain-containing protein -
  AB7I05_RS03740 (AB7I05_03740) - 730404..730610 (+) 207 WP_005656255.1 heavy-metal-associated domain-containing protein -
  AB7I05_RS03745 (AB7I05_03745) - 730684..730890 (+) 207 WP_005656255.1 heavy-metal-associated domain-containing protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 46290.54 Da        Isoelectric Point: 9.8695

>NTDB_id=1030759 AB7I05_RS03695 WP_005694369.1 725015..726235(+) (pilC) [Haemophilus influenzae strain Rd-KW20]
MTKKLFYYQASNPLNQKQKGSIIADTKQQAHFQLISRGLTHIKLQQNWQFGAKPKNSEISELLNQLATLLQSAIPLKNSL
QILQQNCTQIVLNEWLERLLQSIESGLAFSQAIEQQGKYLTQQEIQLIQVGEMTGKLAVVCKKIATHRSQSLALQRKLQK
IMLYPSMVLGISLLLTLALLLFIVPQFAEMYSGNNAELPTITAILLSISNFLKQNIGILLFFVLSFFLFYYFYLKRQTWF
YQKKNQLISITPIFGTIQKLSRLVNFSQSLQIMLQAGVPLNQALDSFLPRTQTWQTKKTLVNDIVLDKEVRSILQWVSQG
YAFSNSVSSDLFPMEAQQMLQIGEQSGKLALMLEHIAENYQEKLNHQIDLLSQMLEPLMMVIIGSLIGIIMMGMYLPIFN
MGSVIQ

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=1030759 AB7I05_RS03695 WP_005694369.1 725015..726235(+) (pilC) [Haemophilus influenzae strain Rd-KW20]
ATGACTAAAAAACTCTTTTATTATCAAGCTAGTAACCCATTAAATCAGAAACAAAAAGGCTCAATTATTGCGGATACAAA
ACAACAAGCACACTTTCAATTAATAAGCCGCGGGCTTACTCACATCAAATTACAACAAAACTGGCAATTTGGGGCAAAGC
CCAAAAATTCAGAAATTAGCGAATTACTCAATCAATTAGCCACGTTGCTACAATCCGCTATTCCGTTAAAAAACAGTCTG
CAAATTTTGCAACAAAATTGTACTCAAATTGTACTCAATGAATGGCTTGAACGACTACTTCAATCTATTGAATCTGGTTT
AGCATTCTCACAAGCCATTGAACAACAAGGGAAATATCTCACACAACAAGAAATTCAACTGATTCAAGTGGGAGAAATGA
CGGGAAAACTTGCCGTAGTTTGTAAAAAAATAGCCACACATCGCAGCCAATCTTTAGCATTACAACGTAAATTACAGAAA
ATTATGTTATATCCCTCAATGGTATTGGGAATTTCTCTATTATTGACACTCGCATTACTGCTTTTTATCGTGCCTCAATT
TGCTGAAATGTACAGTGGCAACAATGCGGAGTTACCAACAATAACCGCAATATTGCTCTCAATATCTAATTTCCTTAAGC
AAAATATTGGCATTTTGCTATTTTTCGTTTTGAGTTTTTTTCTATTTTATTATTTCTATCTAAAACGCCAGACTTGGTTT
TATCAAAAGAAAAATCAACTTATTTCTATCACGCCTATTTTTGGCACAATTCAAAAGCTTTCACGTTTAGTGAACTTTAG
TCAAAGTTTACAAATTATGTTGCAAGCTGGCGTACCGCTTAATCAGGCACTAGACAGTTTTCTCCCTCGCACACAAACGT
GGCAAACCAAGAAAACGCTTGTAAATGACATCGTATTAGATAAAGAAGTGCGGTCAATTTTGCAATGGGTTTCTCAAGGC
TATGCGTTTTCTAATAGTGTAAGTAGCGATCTTTTCCCGATGGAAGCACAACAAATGCTACAAATTGGCGAGCAAAGCGG
AAAACTCGCTTTGATGCTAGAGCATATTGCTGAAAATTACCAAGAAAAACTTAATCATCAAATTGACTTACTCTCACAAA
TGCTAGAACCATTAATGATGGTGATCATCGGCAGTCTGATTGGAATTATTATGATGGGAATGTATTTACCTATCTTTAAT
ATGGGTTCTGTTATTCAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(266-397)

Type II secretion system (T2SS), protein F (T2SSF)

(63-185)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

100

100

1
  pilC Haemophilus influenzae 86-028NP

97.783

100

0.978
  pilC Glaesserella parasuis strain SC1401

38.155

98.768

0.377

Multiple sequence alignment