Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AB6L51_RS08635 Genome accession   NZ_CP163562
Coordinates   1686676..1687926 (+) Length   416 a.a.
NCBI ID   WP_144740219.1    Uniprot ID   -
Organism   Bacillus altitudinis strain BC255T1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1681676..1692926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6L51_RS08610 (AB6L51_08615) ymfI 1683087..1683815 (+) 729 WP_144740222.1 elongation factor P 5-aminopentanone reductase -
  AB6L51_RS08615 (AB6L51_08620) - 1683889..1684146 (+) 258 WP_008344693.1 DUF3243 domain-containing protein -
  AB6L51_RS08620 (AB6L51_08625) - 1684278..1685069 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  AB6L51_RS08625 (AB6L51_08630) - 1685093..1686004 (+) 912 WP_072367246.1 helix-turn-helix domain-containing protein -
  AB6L51_RS08630 (AB6L51_08635) pgsA 1686078..1686659 (+) 582 WP_008344688.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB6L51_RS08635 (AB6L51_08640) cinA 1686676..1687926 (+) 1251 WP_144740219.1 competence/damage-inducible protein A Machinery gene
  AB6L51_RS08640 (AB6L51_08645) recA 1688104..1689147 (+) 1044 WP_007499478.1 recombinase RecA Machinery gene
  AB6L51_RS08645 (AB6L51_08650) rny 1689448..1691010 (+) 1563 WP_003211958.1 ribonuclease Y -
  AB6L51_RS08650 (AB6L51_08655) - 1691100..1691894 (+) 795 WP_008344680.1 TIGR00282 family metallophosphoesterase -
  AB6L51_RS08655 (AB6L51_08660) spoVS 1692097..1692357 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45642.78 Da        Isoelectric Point: 4.8653

>NTDB_id=1030668 AB6L51_RS08635 WP_144740219.1 1686676..1687926(+) (cinA) [Bacillus altitudinis strain BC255T1]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKRAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQEYFRKTGRDMSPNNRKQALVLEGSDVLVNRFGMAPGMFIQEGDTFYILLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSIVLRFFGIGESQLETDLEDLIDAQTNPTIAPLAADGEVTLRLTAKHEDEKETERLL
KETEAQILERVGEYFYGYGDTSLAFEASKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSILNGSVVCYTNQVKQQVLG
CREETLSSHGAVSKECALELAEGVRKLTGSDIGISFTGVAGPEPHEGQPVGKVFIGLSTKDQTDVFEWMFTGSRSGIRKR
AVKYGLHHLLKLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1030668 AB6L51_RS08635 WP_144740219.1 1686676..1687926(+) (cinA) [Bacillus altitudinis strain BC255T1]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTTTTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAACTAGCTGAAATTGGTGTGAATGTTTATTACCACACAGCTGTTGGTGACAATCCAGAGCGTTTAA
AAAGGGCCATTCAAGTGGCACAGGAAAGATCAAATTTTATTATCTTCTCAGGTGGTCTTGGACCAACGAAAGACGATTTA
ACAAAAGAAACCATTGCGAGTACGCTCGGTAAAGAGCTTGTGCTAAATGAAGAAGCATTTGAGTCTATTCAAGAATACTT
CCGTAAAACCGGACGTGATATGTCTCCGAACAACCGTAAACAGGCGCTCGTTCTAGAGGGATCTGATGTGCTCGTAAACC
GTTTCGGAATGGCACCTGGCATGTTTATACAAGAGGGAGATACGTTTTACATTCTGCTCCCTGGACCGCCAAGTGAATTG
CACCCGATGTTTGAAAACGAAGCGAAGCCGCTTATTTCTGAAAAACTTGGCCTAAAGGAAAAAATCGTGTCTATAGTCTT
GCGTTTCTTTGGCATCGGTGAATCTCAACTGGAAACAGATCTTGAAGATTTAATTGATGCACAGACCAATCCAACGATTG
CACCGCTTGCAGCTGACGGGGAAGTGACGCTAAGGCTGACAGCCAAGCATGAGGATGAAAAAGAAACAGAGCGTCTGTTA
AAAGAAACAGAAGCACAAATTTTAGAACGGGTCGGCGAGTACTTCTACGGATATGGTGATACATCTCTGGCCTTTGAAGC
TTCAAAGGCCTTGCATGAACACGGGAAAACAGTAGCAGCGGCTGAAAGCCTGACTGGTGGTATGTTTTCAGAGTGGCTGA
CAGATCTCGAAGGGGCATCATCCATTTTAAACGGCAGTGTGGTTTGTTACACAAATCAAGTCAAGCAGCAAGTGCTGGGC
TGCCGTGAAGAAACATTGTCTTCTCATGGTGCTGTTAGCAAAGAGTGTGCGTTAGAGCTCGCAGAAGGCGTTAGAAAACT
GACGGGAAGCGATATCGGTATTAGCTTTACAGGTGTGGCAGGTCCTGAACCACACGAAGGACAGCCGGTTGGAAAAGTAT
TTATCGGGCTATCGACAAAAGATCAGACAGACGTGTTTGAATGGATGTTTACTGGCAGTCGATCAGGCATTCGCAAGCGT
GCTGTGAAATATGGTTTGCACCACCTTCTCAAATTATTAAAAGAAAGTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(262-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

74.699

99.76

0.745
  cinA Streptococcus mitis SK321

47.847

100

0.481
  cinA Streptococcus mitis NCTC 12261

47.608

100

0.478
  cinA Streptococcus pneumoniae TIGR4

47.608

100

0.478
  cinA Streptococcus pneumoniae Rx1

47.368

100

0.476
  cinA Streptococcus pneumoniae R6

47.368

100

0.476
  cinA Streptococcus pneumoniae D39

47.129

100

0.474
  cinA Streptococcus mutans UA159

48.157

97.837

0.471
  cinA Streptococcus suis isolate S10

43.386

90.865

0.394

Multiple sequence alignment