Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AB3Q54_RS08165 Genome accession   NZ_CP163515
Coordinates   1612612..1613862 (-) Length   416 a.a.
NCBI ID   WP_369351551.1    Uniprot ID   -
Organism   Ligilactobacillus agilis strain W70     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1607612..1618862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Q54_RS08150 (AB3Q54_08150) - 1607703..1609565 (-) 1863 WP_369351550.1 monovalent cation:proton antiporter family protein -
  AB3Q54_RS08155 (AB3Q54_08155) rny 1609716..1611281 (-) 1566 WP_089145028.1 ribonuclease Y -
  AB3Q54_RS08160 (AB3Q54_08160) recA 1611456..1612538 (-) 1083 WP_050611218.1 recombinase RecA Machinery gene
  AB3Q54_RS08165 (AB3Q54_08165) cinA 1612612..1613862 (-) 1251 WP_369351551.1 competence/damage-inducible protein A Machinery gene
  AB3Q54_RS08170 (AB3Q54_08170) pgsA 1613998..1614591 (-) 594 WP_056976996.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB3Q54_RS08175 (AB3Q54_08175) - 1614607..1615530 (-) 924 WP_167589022.1 helix-turn-helix domain-containing protein -
  AB3Q54_RS08180 (AB3Q54_08180) - 1615642..1616367 (-) 726 WP_369351552.1 SDR family NAD(P)-dependent oxidoreductase -
  AB3Q54_RS08185 (AB3Q54_08185) - 1616375..1617670 (-) 1296 WP_369351553.1 M16 family metallopeptidase -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45269.97 Da        Isoelectric Point: 6.2634

>NTDB_id=1030407 AB3Q54_RS08165 WP_369351551.1 1612612..1613862(-) (cinA) [Ligilactobacillus agilis strain W70]
MHAEIIAVGTEILLGQIVDTNTRLVGQVLADLGIDVYYQTVVGDNEVRMKAAIDLAAKRSDLVILTGGLGPTKDDLTKQV
VAAYLGKQLVEDEAAMLKIKRHFEISQRKMTANNRLQALYIEGSKPLANETGLAVGDFYQAEQGPDFMLLPGPPSELRPM
LFKVALPLLKQAYRQDQILSSRVLRFFGIGESQLASQLDDLIENQTNPTIAPYAKDNEVTLRLTTSAKDEQEAQHLLDGL
ESKIAKRCGQYLYGYGDDNSLAQVVMTKLREKHLTITAAESLTGGQLQAALTSIPGASQAFMGGFVTYANCAKEKLLAIP
AEVIDKHGSVSEQTAILMAEQAKQKLGADVGVSLTGVAGPDSLEGQPVGTVWIGIAYRNKAGYAQKFHFPRQRKYVQARA
VLTALDLVRKELLSEN

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1030407 AB3Q54_RS08165 WP_369351551.1 1612612..1613862(-) (cinA) [Ligilactobacillus agilis strain W70]
ATGCATGCAGAAATAATTGCAGTAGGAACAGAAATATTATTAGGCCAAATTGTTGATACTAATACAAGGTTAGTCGGTCA
GGTTTTAGCCGATTTGGGGATAGATGTCTATTACCAAACGGTGGTTGGCGATAACGAAGTTAGGATGAAAGCTGCGATTG
ATTTGGCGGCTAAACGAAGTGACCTAGTGATCCTTACTGGGGGCTTGGGACCAACTAAAGATGATTTGACTAAGCAAGTT
GTTGCAGCTTATCTAGGTAAGCAGTTAGTTGAAGATGAAGCGGCCATGCTTAAGATTAAGCGTCACTTTGAAATTAGTCA
GCGCAAGATGACGGCTAACAATCGCTTGCAGGCCCTTTATATCGAAGGTTCAAAGCCACTTGCAAATGAGACGGGGCTAG
CCGTGGGTGACTTTTATCAAGCTGAGCAGGGACCAGATTTTATGTTGTTACCTGGACCGCCAAGTGAGTTAAGACCAATG
CTGTTTAAGGTTGCCTTACCCTTGCTAAAACAAGCTTACCGACAAGACCAAATTTTAAGTTCAAGGGTATTGCGCTTCTT
TGGTATTGGGGAGTCACAATTAGCTAGCCAGTTGGATGATTTAATTGAAAATCAAACTAACCCAACGATAGCACCTTATG
CTAAGGATAATGAGGTTACTTTGCGGTTAACAACCAGTGCTAAAGACGAACAAGAAGCGCAGCATTTACTTGATGGGCTA
GAAAGTAAAATTGCTAAGCGCTGTGGTCAATATTTATATGGCTATGGCGACGATAATAGCTTAGCTCAAGTTGTAATGAC
TAAGTTAAGAGAAAAACACCTAACCATAACAGCGGCAGAAAGCCTAACTGGTGGTCAACTTCAAGCGGCGCTAACAAGTA
TTCCCGGTGCTTCGCAAGCCTTTATGGGAGGCTTTGTCACCTATGCAAACTGTGCCAAGGAAAAATTATTAGCTATTCCA
GCTGAGGTCATTGATAAGCATGGGAGTGTTAGTGAACAGACTGCGATTTTAATGGCTGAGCAAGCTAAACAAAAGCTAGG
AGCTGATGTGGGGGTTAGTTTGACTGGGGTAGCTGGTCCTGATAGCTTAGAGGGGCAACCGGTGGGGACCGTTTGGATTG
GAATTGCTTACCGAAATAAAGCCGGTTATGCCCAAAAATTCCATTTCCCAAGGCAGAGAAAGTATGTACAAGCGAGAGCT
GTGCTGACTGCTTTAGATTTAGTCAGAAAAGAATTGTTAAGCGAAAATTAG

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Competence-damaged protein (CinA)

(259-412)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

52.471

100

0.536
  cinA Streptococcus mitis NCTC 12261

52.235

100

0.534
  cinA Streptococcus mutans UA159

52.758

100

0.529
  cinA Streptococcus pneumoniae TIGR4

52.009

100

0.529
  cinA Streptococcus pneumoniae Rx1

51.773

100

0.526
  cinA Streptococcus pneumoniae R6

51.773

100

0.526
  cinA Streptococcus pneumoniae D39

51.537

100

0.524
  cinA Bacillus subtilis subsp. subtilis str. 168

47.805

98.558

0.471
  cinA Streptococcus suis isolate S10

43.943

100

0.445

Multiple sequence alignment