Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AB4X21_RS09710 Genome accession   NZ_CP163380
Coordinates   1973627..1974895 (-) Length   422 a.a.
NCBI ID   WP_320911087.1    Uniprot ID   -
Organism   Streptococcus sp. CP1998     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1968627..1979895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4X21_RS09680 (AB4X21_09680) - 1970005..1970310 (-) 306 WP_320911089.1 DUF1292 domain-containing protein -
  AB4X21_RS09685 (AB4X21_09685) ruvX 1970333..1970752 (-) 420 WP_003002199.1 Holliday junction resolvase RuvX -
  AB4X21_RS09690 (AB4X21_09690) - 1970752..1971018 (-) 267 WP_003002070.1 IreB family regulatory phosphoprotein -
  AB4X21_RS09695 (AB4X21_09695) - 1971143..1971739 (-) 597 WP_369087926.1 SP0191 family lipoprotein -
  AB4X21_RS09700 (AB4X21_09700) spx 1971875..1972273 (-) 399 WP_003002116.1 transcriptional regulator Spx -
  AB4X21_RS09705 (AB4X21_09705) recA 1972361..1973506 (-) 1146 WP_003002082.1 recombinase RecA Machinery gene
  AB4X21_RS09710 (AB4X21_09710) cinA 1973627..1974895 (-) 1269 WP_320911087.1 competence/damage-inducible protein A Machinery gene
  AB4X21_RS09715 (AB4X21_09715) - 1974993..1975547 (-) 555 WP_369087927.1 DNA-3-methyladenine glycosylase I -
  AB4X21_RS09720 (AB4X21_09720) ruvA 1975557..1976150 (-) 594 WP_003002260.1 Holliday junction branch migration protein RuvA -
  AB4X21_RS09725 (AB4X21_09725) mutL 1976171..1978114 (-) 1944 WP_320911085.1 DNA mismatch repair endonuclease MutL -
  AB4X21_RS09730 (AB4X21_09730) - 1978363..1978803 (+) 441 WP_151379237.1 LytTR family DNA-binding domain-containing protein -
  AB4X21_RS09735 (AB4X21_09735) - 1978797..1979252 (+) 456 WP_003012810.1 DUF3021 domain-containing protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45043.24 Da        Isoelectric Point: 4.8631

>NTDB_id=1029450 AB4X21_RS09710 WP_320911087.1 1973627..1974895(-) (cinA) [Streptococcus sp. CP1998]
MKAEIIAVGTEILTGQIVNTNAQFLSEKLASLGIDVYYHVAVGDNEGRLFSTIETASKRSDLVILCGGLGPTEDDLTKQT
LAKFLGKELVFDPTALAKLDTFFASRPDYVRTPNNERQAQLIAGSIPLQNRTGLAVGGLIEVNGVTYVVLPGPPSELKPM
VNEQLVPHLTTGEELFSRVLRFFGIGESQLVTILADIIEKQSDPTVAPYAKTGEVTLRLSTKAKDQASADAKLDVLEKEI
LSRHTLDHQPLQELFYGYGDDNSMAKVAFDLLKQAGKTITAAESLTAGLFQATLADFSGASSIFAGGFVTYSLEEKSKML
SIPAQELEQHGVVSHFTAQAMASQARKLTGSDYGVSLTGVAGPDSLEGHPAGTVFIGLATPNGVDSVQVNIAGRSRADVR
EIAVLHAFNLVRLAVLNGENLV

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=1029450 AB4X21_RS09710 WP_320911087.1 1973627..1974895(-) (cinA) [Streptococcus sp. CP1998]
ATGAAGGCGGAAATTATTGCAGTTGGAACAGAAATTCTAACAGGACAAATTGTGAACACCAATGCTCAATTCTTGTCTGA
AAAATTGGCTAGTTTAGGGATTGATGTCTATTATCATGTGGCGGTAGGAGACAATGAAGGTCGTCTCTTCTCGACCATTG
AGACGGCTTCAAAACGCAGTGATTTGGTGATTTTATGTGGTGGACTTGGGCCAACAGAGGATGATTTGACCAAGCAAACC
CTTGCTAAGTTTTTAGGGAAAGAACTGGTTTTTGATCCAACAGCGCTTGCCAAACTCGACACCTTCTTTGCCAGTCGCCC
TGATTATGTCCGGACGCCCAATAATGAGCGACAAGCACAATTGATTGCCGGTTCAATCCCCCTTCAAAACCGTACAGGTC
TCGCGGTTGGAGGTTTGATTGAAGTCAATGGTGTGACCTATGTCGTTCTACCTGGTCCACCAAGTGAGTTAAAACCCATG
GTCAATGAACAATTGGTGCCTCATTTGACAACAGGGGAAGAGCTTTTTTCAAGAGTCTTGCGCTTCTTTGGGATTGGGGA
AAGCCAGCTGGTTACGATCCTAGCAGATATCATTGAAAAGCAGAGTGATCCGACGGTTGCCCCTTATGCCAAGACGGGAG
AAGTAACCTTGCGTCTATCTACAAAGGCGAAGGATCAAGCCTCAGCGGATGCTAAGCTCGATGTCTTAGAAAAGGAAATC
TTATCCCGTCATACTCTGGATCATCAACCCTTGCAAGAGTTGTTTTACGGTTATGGGGATGACAATTCGATGGCCAAGGT
GGCCTTTGATCTTTTGAAACAGGCTGGTAAGACCATTACAGCTGCAGAAAGCCTGACGGCCGGCCTTTTCCAAGCGACTT
TGGCAGATTTTTCAGGTGCGTCCAGCATCTTCGCGGGTGGTTTTGTCACCTATAGTTTGGAAGAAAAAAGCAAGATGTTG
TCTATTCCAGCTCAAGAGTTAGAGCAACATGGAGTGGTGTCTCATTTTACAGCTCAAGCCATGGCTTCACAGGCCCGTAA
GTTAACAGGATCCGATTATGGTGTTAGCCTGACCGGAGTTGCGGGGCCAGATAGTCTAGAAGGGCACCCAGCAGGGACTG
TCTTTATCGGACTTGCGACTCCGAATGGAGTGGATAGTGTCCAAGTTAATATCGCTGGACGTAGCCGGGCGGATGTCCGC
GAAATTGCAGTCCTTCATGCCTTTAATTTGGTGCGCTTGGCTGTATTAAATGGTGAAAATTTGGTATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(177-243)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(262-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

74.58

98.815

0.737
  cinA Streptococcus mitis NCTC 12261

74.58

98.815

0.737
  cinA Streptococcus pneumoniae TIGR4

73.381

98.815

0.725
  cinA Streptococcus pneumoniae Rx1

73.381

98.815

0.725
  cinA Streptococcus pneumoniae R6

73.381

98.815

0.725
  cinA Streptococcus pneumoniae D39

73.141

98.815

0.723
  cinA Streptococcus mutans UA159

70.213

100

0.704
  cinA Streptococcus suis isolate S10

55.448

97.867

0.543
  cinA Bacillus subtilis subsp. subtilis str. 168

47.47

98.341

0.467

Multiple sequence alignment