Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AB4X21_RS08390 Genome accession   NZ_CP163380
Coordinates   1652953..1653450 (-) Length   165 a.a.
NCBI ID   WP_049486245.1    Uniprot ID   A0A414CMV9
Organism   Streptococcus sp. CP1998     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1647953..1658450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4X21_RS08370 (AB4X21_08370) - 1650208..1651152 (+) 945 WP_003005422.1 magnesium transporter CorA family protein -
  AB4X21_RS08375 (AB4X21_08375) - 1651181..1651858 (+) 678 WP_369087800.1 DUF1129 domain-containing protein -
  AB4X21_RS08380 (AB4X21_08380) - 1651893..1652414 (-) 522 WP_023919016.1 GNAT family N-acetyltransferase -
  AB4X21_RS08385 (AB4X21_08385) rpsR 1652672..1652911 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  AB4X21_RS08390 (AB4X21_08390) ssbA 1652953..1653450 (-) 498 WP_049486245.1 single-stranded DNA-binding protein Machinery gene
  AB4X21_RS08395 (AB4X21_08395) rpsF 1653471..1653761 (-) 291 WP_003005040.1 30S ribosomal protein S6 -
  AB4X21_RS08400 (AB4X21_08400) - 1654061..1655113 (+) 1053 WP_155172488.1 bifunctional glycosyltransferase family 2/GtrA family protein -
  AB4X21_RS08405 (AB4X21_08405) - 1655100..1655998 (+) 899 Protein_1610 phosphodiester glycosidase family protein -
  AB4X21_RS08410 (AB4X21_08410) - 1655979..1656386 (+) 408 WP_369088375.1 hypothetical protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17947.73 Da        Isoelectric Point: 4.9371

>NTDB_id=1029446 AB4X21_RS08390 WP_049486245.1 1652953..1653450(-) (ssbA) [Streptococcus sp. CP1998]
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKSQNGEREADFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADSFQLLESRAAREGHAGGGYSSGNGGFAGNATPSFGGSEPSNVAPNFGREENPFGANPMDISD
DDLPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=1029446 AB4X21_RS08390 WP_049486245.1 1652953..1653450(-) (ssbA) [Streptococcus sp. CP1998]
ATGATTAACAATGTTGTACTTGTCGGTCGTATGACCCGTGATGCTGAACTTCGCTACACTCCAAGCAATCAAGCAGTTGC
TACTTTCAGCCTAGCTGTCAACCGCAACTTCAAGAGTCAAAATGGAGAGCGCGAAGCCGATTTCATCAACTGTGTGATCT
GGCGTCAGCAAGCAGAAAACTTAGCCAACTGGGCTAAGAAAGGTGCTTTGATTGGGATTACCGGTCGCATTCAAACACGT
AATTACGAAAACCAGCAAGGTCAACGTGTTTATGTCACTGAAGTCGTAGCAGACAGCTTCCAACTATTGGAAAGCCGTGC
AGCACGCGAAGGGCATGCAGGTGGTGGTTATTCATCAGGTAATGGTGGTTTTGCTGGAAATGCAACCCCAAGCTTTGGTG
GATCTGAACCAAGCAATGTAGCGCCAAACTTTGGTCGTGAAGAAAATCCATTTGGAGCTAATCCAATGGATATCTCAGAC
GACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A414CMV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.857

100

0.624
  ssb Latilactobacillus sakei subsp. sakei 23K

58.235

100

0.6
  ssbB/cilA Streptococcus pneumoniae TIGR4

52.137

70.909

0.37
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.061

0.364
  ssbB/cilA Streptococcus pneumoniae R6

51.282

70.909

0.364
  ssbB/cilA Streptococcus mitis SK321

51.282

70.909

0.364
  ssbB/cilA Streptococcus mitis NCTC 12261

51.282

70.909

0.364
  ssbB/cilA Streptococcus pneumoniae Rx1

51.282

70.909

0.364
  ssbB/cilA Streptococcus pneumoniae D39

51.282

70.909

0.364

Multiple sequence alignment