Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NST61_RS08905 Genome accession   NZ_CP163266
Coordinates   1809501..1810736 (+) Length   411 a.a.
NCBI ID   WP_368976457.1    Uniprot ID   -
Organism   Caldifermentibacillus hisashii strain FSL K6-2771     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1804501..1815736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST61_RS08880 (NST61_08880) - 1805466..1806197 (+) 732 WP_368976451.1 SDR family oxidoreductase -
  NST61_RS08885 (NST61_08885) - 1806438..1806695 (+) 258 WP_368976453.1 DUF3243 domain-containing protein -
  NST61_RS08890 (NST61_08890) - 1807026..1807817 (+) 792 WP_108899099.1 DUF3388 domain-containing protein -
  NST61_RS08895 (NST61_08895) - 1807835..1808731 (+) 897 WP_368976455.1 helix-turn-helix domain-containing protein -
  NST61_RS08900 (NST61_08900) pgsA 1808849..1809427 (+) 579 WP_034769896.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NST61_RS08905 (NST61_08905) cinA 1809501..1810736 (+) 1236 WP_368976457.1 competence/damage-inducible protein A Machinery gene
  NST61_RS08910 (NST61_08910) - 1810926..1811183 (+) 258 WP_227092318.1 hypothetical protein -
  NST61_RS08915 (NST61_08915) - 1811231..1811599 (+) 369 WP_368976459.1 hypothetical protein -
  NST61_RS08920 (NST61_08920) - 1811584..1812027 (+) 444 WP_368976461.1 YaiI/YqxD family protein -
  NST61_RS08925 (NST61_08925) - 1812061..1812195 (+) 135 WP_264467536.1 hypothetical protein -
  NST61_RS08930 (NST61_08930) - 1812162..1812299 (+) 138 WP_161792869.1 hypothetical protein -
  NST61_RS08935 (NST61_08935) - 1812266..1812610 (+) 345 WP_368976465.1 hypothetical protein -
  NST61_RS08940 (NST61_08940) - 1812629..1812922 (+) 294 WP_368976467.1 hypothetical protein -
  NST61_RS08945 (NST61_08945) - 1813007..1813921 (-) 915 WP_340496028.1 CAP domain-containing protein -
  NST61_RS08950 (NST61_08950) - 1814394..1814495 (+) 102 WP_268756472.1 putative holin-like toxin -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 45232.71 Da        Isoelectric Point: 4.9457

>NTDB_id=1029185 NST61_RS08905 WP_368976457.1 1809501..1810736(+) (cinA) [Caldifermentibacillus hisashii strain FSL K6-2771]
MNGEIIAVGSELLLGQIANTNAKFISQQLAGIGVNVFFHTVVGDNAERLKRAVEIAESRSNLIIFTGGLGPTKDDLTKET
IANHLGVKLIHNEAALGSIEEFFRKRNVTMTPNNRKQALVFEHAEVLPNDTGMAPGMVLTKNEITYMLLPGPPSEMEPMF
SNYGMKAILNRLESIDRIESRVLRFFGIGESTLEHALEDFIDQQTNPTIAPLASDGEVTLRLTAKHPSDLERRRLLDETE
AKIMERVGEYFYGYDETTIIKEMGNLIESNNMTLSVAESLTGGLFQEEVTSIAGVSKWFKGGIVSYSPEVKINVLGVNQD
TVETYGVVSKECAMEMAENVRKLMDTDIGISFTGVAGPASLEGKEPGSVYIAVSFKNKPTVSHFVLLPGNRETVRVRAVK
TGAWYILNELR

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=1029185 NST61_RS08905 WP_368976457.1 1809501..1810736(+) (cinA) [Caldifermentibacillus hisashii strain FSL K6-2771]
TTGAATGGTGAAATTATTGCAGTTGGGTCTGAATTATTACTTGGCCAAATTGCTAATACGAATGCAAAATTTATTTCTCA
ACAATTGGCCGGTATTGGGGTAAATGTATTTTTCCATACCGTTGTTGGGGATAATGCCGAGCGGTTGAAAAGAGCGGTGG
AAATTGCCGAAAGTCGTTCCAATTTAATTATATTTACGGGTGGCTTAGGGCCTACAAAAGATGATTTAACAAAAGAAACC
ATTGCCAATCATCTGGGAGTGAAGCTCATCCATAATGAAGCGGCTCTTGGCTCGATAGAAGAATTTTTTAGAAAACGGAA
TGTTACCATGACACCGAATAATCGGAAACAAGCACTTGTTTTTGAACATGCGGAGGTTTTGCCAAACGATACCGGAATGG
CACCGGGAATGGTGTTAACAAAAAATGAAATTACTTATATGCTACTTCCCGGTCCGCCTAGTGAAATGGAGCCGATGTTT
TCAAATTATGGGATGAAAGCAATCCTAAATCGGTTGGAATCCATTGATCGAATTGAATCTCGTGTGTTACGATTTTTTGG
TATTGGTGAATCAACTCTGGAACATGCGCTGGAAGATTTCATTGATCAGCAGACAAACCCGACTATTGCCCCGCTCGCTT
CTGATGGCGAAGTGACATTGCGGCTTACAGCTAAACATCCCTCAGATCTTGAACGAAGAAGGTTACTGGATGAGACAGAA
GCAAAAATTATGGAGCGGGTGGGTGAATATTTTTACGGATATGATGAAACAACGATTATCAAAGAAATGGGCAATTTGAT
TGAAAGCAACAACATGACACTTTCGGTAGCTGAAAGTTTAACGGGCGGACTGTTTCAGGAAGAAGTGACATCCATTGCCG
GTGTCAGCAAATGGTTTAAAGGCGGGATCGTATCGTATTCCCCTGAAGTAAAAATAAATGTACTTGGCGTAAATCAGGAC
ACTGTTGAAACTTATGGTGTCGTCAGTAAAGAATGTGCGATGGAGATGGCAGAAAATGTCCGAAAATTGATGGACACTGA
TATCGGAATCAGCTTTACCGGTGTTGCCGGACCAGCCTCATTGGAAGGAAAGGAACCCGGTTCAGTTTATATTGCCGTTT
CATTTAAGAATAAGCCTACTGTTAGTCATTTTGTCTTATTGCCGGGAAACAGAGAAACGGTTCGTGTCCGTGCTGTAAAA
ACCGGCGCTTGGTATATTTTAAATGAACTTCGGTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-165)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

60.688

99.027

0.601
  cinA Streptococcus mutans UA159

46.173

98.54

0.455
  cinA Streptococcus mitis SK321

47.781

93.187

0.445
  cinA Streptococcus mitis NCTC 12261

47.781

93.187

0.445
  cinA Streptococcus pneumoniae TIGR4

47.781

93.187

0.445
  cinA Streptococcus pneumoniae Rx1

47.258

93.187

0.44
  cinA Streptococcus pneumoniae R6

47.258

93.187

0.44
  cinA Streptococcus pneumoniae D39

46.997

93.187

0.438
  cinA Streptococcus suis isolate S10

40.106

92.214

0.37

Multiple sequence alignment