Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NSQ86_RS08330 Genome accession   NZ_CP163265
Coordinates   1691155..1692390 (+) Length   411 a.a.
NCBI ID   WP_251240949.1    Uniprot ID   -
Organism   Caldifermentibacillus hisashii strain FSL M8-0368     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1686155..1697390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ86_RS08305 - 1687190..1687921 (+) 732 WP_034769892.1 SDR family oxidoreductase -
  NSQ86_RS08310 - 1688092..1688349 (+) 258 WP_034769894.1 DUF3243 domain-containing protein -
  NSQ86_RS08315 - 1688650..1689471 (+) 822 WP_368997618.1 DUF3388 domain-containing protein -
  NSQ86_RS08320 - 1689489..1690385 (+) 897 WP_041903276.1 RodZ domain-containing protein -
  NSQ86_RS08325 pgsA 1690503..1691081 (+) 579 WP_041903278.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NSQ86_RS08330 cinA 1691155..1692390 (+) 1236 WP_251240949.1 competence/damage-inducible protein A Machinery gene
  NSQ86_RS08335 - 1692589..1692837 (+) 249 WP_034769901.1 hypothetical protein -
  NSQ86_RS08340 - 1693094..1693537 (+) 444 WP_227092320.1 YaiI/YqxD family protein -
  NSQ86_RS08345 - 1693505..1693648 (-) 144 WP_368997621.1 hypothetical protein -
  NSQ86_RS08350 - 1693620..1693808 (+) 189 WP_363549143.1 hypothetical protein -
  NSQ86_RS08355 - 1693827..1693955 (+) 129 WP_368997623.1 hypothetical protein -
  NSQ86_RS08360 - 1694038..1694952 (-) 915 WP_269919138.1 CAP domain-containing protein -
  NSQ86_RS08365 - 1695425..1695526 (+) 102 WP_268756472.1 putative holin-like toxin -
  NSQ86_RS08370 - 1695972..1696142 (+) 171 WP_231553317.1 metal-sensing transcriptional repressor -
  NSQ86_RS08375 - 1696202..1696709 (+) 508 Protein_1608 glycogen/starch/alpha-glucan phosphorylase -
  NSQ86_RS08380 - 1696904..1697164 (+) 261 WP_034769908.1 transcriptional regulator SplA domain-containing protein -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 45308.82 Da        Isoelectric Point: 4.9487

>NTDB_id=1029140 NSQ86_RS08330 WP_251240949.1 1691155..1692390(+) (cinA) [Caldifermentibacillus hisashii strain FSL M8-0368]
MNGEIIAVGSELLLGQIANTNAKFISQQLAGIGVNVFFHTVVGDNAERLKRAMEIAESRSDLIIFTGGLGPTKDDLTKET
IANHLGVKLVHNEAALGSIEEFFRKRNVTMTPNNRKQALVFEHAEVLPNDTGMAPGMVLTKNEITYMLLPGPPSEMEPMF
SNYGMKAILNRLESIDRIESRVLRFFGIGESTLEHTLEDFIDQQTNPTIAPLASDDEVTLRLTAKHPSDLERRRLLDETE
AKIMERVGEFFYGYDETTIIKEMGNLIESNNMTLSVAESLTGGLFQEEVTSIAGVSKWFQGGIVSYSPEIKINVLGVNQD
TVETYGVVSKECAMEMAKNVRKLMDTDIGISFTGVAGPASLEGKEPGSVYIGVSFKNKPTASHFVLLPGNRETVRVRAVK
TGAWYILKELR

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=1029140 NSQ86_RS08330 WP_251240949.1 1691155..1692390(+) (cinA) [Caldifermentibacillus hisashii strain FSL M8-0368]
TTGAATGGTGAAATTATTGCAGTTGGGTCTGAATTATTACTTGGCCAAATTGCTAATACGAATGCAAAATTTATTTCTCA
ACAATTGGCCGGTATTGGGGTAAATGTATTTTTCCATACCGTTGTTGGGGATAATGCCGAGCGGTTGAAAAGAGCGATGG
AAATTGCCGAAAGTCGTTCCGATTTAATTATTTTTACGGGTGGCTTAGGGCCTACAAAAGATGATTTAACAAAAGAAACC
ATTGCAAATCATCTGGGAGTAAAGCTTGTTCATAATGAAGCGGCTCTTGGCTCGATAGAAGAATTTTTTAGAAAACGGAA
TGTTACCATGACACCGAATAATCGGAAACAAGCACTTGTTTTTGAACATGCGGAGGTTTTGCCAAACGATACCGGAATGG
CACCGGGAATGGTGTTAACAAAAAATGAAATTACTTATATGCTACTTCCCGGTCCGCCTAGTGAAATGGAGCCGATGTTT
TCAAATTATGGGATGAAAGCAATCCTAAATCGGTTGGAATCCATTGATCGAATTGAATCTCGTGTGTTACGATTTTTTGG
TATTGGTGAATCAACTCTGGAACATACGCTGGAAGATTTCATTGATCAGCAGACAAACCCGACCATTGCCCCGCTCGCTT
CTGATGACGAAGTGACATTGCGGCTTACAGCTAAACATCCCTCAGATCTTGAACGAAGAAGGTTACTGGATGAGACAGAA
GCAAAAATTATGGAGCGGGTGGGTGAATTTTTTTACGGATATGATGAAACAACGATTATCAAAGAAATGGGCAATTTGAT
TGAAAGCAACAACATGACACTTTCGGTAGCTGAAAGTTTAACGGGCGGACTGTTTCAGGAAGAAGTGACATCCATTGCCG
GTGTCAGCAAATGGTTTCAGGGCGGGATCGTATCGTATTCCCCTGAAATAAAAATAAATGTACTTGGCGTAAATCAGGAC
ACTGTTGAAACTTATGGTGTCGTCAGCAAAGAATGTGCGATGGAGATGGCAAAAAATGTCCGAAAATTGATGGACACTGA
TATCGGAATCAGCTTTACCGGTGTTGCCGGACCAGCCTCATTGGAAGGAAAAGAACCCGGTTCAGTATATATTGGTGTGT
CATTTAAGAATAAGCCTACCGCCAGTCATTTTGTCTTATTGCCGGGAAACAGAGAAACGGTTCGTGTCCGTGCCGTAAAA
ACCGGTGCATGGTATATATTAAAGGAACTTCGGTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-404)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

61.425

99.027

0.608
  cinA Streptococcus mutans UA159

45.926

98.54

0.453
  cinA Streptococcus pneumoniae TIGR4

47.781

93.187

0.445
  cinA Streptococcus mitis NCTC 12261

47.52

93.187

0.443
  cinA Streptococcus mitis SK321

47.52

93.187

0.443
  cinA Streptococcus pneumoniae Rx1

47.52

93.187

0.443
  cinA Streptococcus pneumoniae R6

47.52

93.187

0.443
  cinA Streptococcus pneumoniae D39

47.258

93.187

0.44
  cinA Streptococcus suis isolate S10

39.578

92.214

0.365

Multiple sequence alignment