Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NST54_RS08930 Genome accession   NZ_CP163264
Coordinates   1820797..1822032 (+) Length   411 a.a.
NCBI ID   WP_368987138.1    Uniprot ID   -
Organism   Caldifermentibacillus hisashii strain FSL K6-0152     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1815797..1827032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST54_RS08905 (NST54_08905) - 1816763..1817494 (+) 732 WP_034769892.1 SDR family oxidoreductase -
  NST54_RS08910 (NST54_08910) - 1817734..1817991 (+) 258 WP_368987136.1 DUF3243 domain-containing protein -
  NST54_RS08915 (NST54_08915) - 1818322..1819113 (+) 792 WP_041846659.1 DUF3388 domain-containing protein -
  NST54_RS08920 (NST54_08920) - 1819131..1820027 (+) 897 WP_368987137.1 helix-turn-helix domain-containing protein -
  NST54_RS08925 (NST54_08925) pgsA 1820145..1820723 (+) 579 WP_041846562.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NST54_RS08930 (NST54_08930) cinA 1820797..1822032 (+) 1236 WP_368987138.1 competence/damage-inducible protein A Machinery gene
  NST54_RS08935 (NST54_08935) - 1822231..1822479 (+) 249 WP_041903281.1 hypothetical protein -
  NST54_RS08940 (NST54_08940) - 1822527..1822877 (+) 351 WP_095141157.1 hypothetical protein -
  NST54_RS08945 (NST54_08945) - 1823015..1823461 (+) 447 WP_041848666.1 YaiI/YqxD family protein -
  NST54_RS08950 (NST54_08950) - 1823495..1823680 (+) 186 WP_368987140.1 hypothetical protein -
  NST54_RS08955 (NST54_08955) - 1823647..1823784 (+) 138 WP_368987141.1 hypothetical protein -
  NST54_RS08960 (NST54_08960) - 1823817..1824731 (-) 915 WP_368987142.1 CAP domain-containing protein -
  NST54_RS08965 (NST54_08965) - 1825204..1825305 (+) 102 WP_082026100.1 putative holin-like toxin -
  NST54_RS08970 (NST54_08970) - 1825751..1825921 (+) 171 WP_231553317.1 metal-sensing transcriptional repressor -
  NST54_RS08975 (NST54_08975) - 1825981..1826478 (+) 498 Protein_1727 glycogen/starch/alpha-glucan phosphorylase -
  NST54_RS08980 (NST54_08980) - 1826684..1826944 (+) 261 WP_034769908.1 transcriptional regulator SplA domain-containing protein -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 45191.75 Da        Isoelectric Point: 5.3554

>NTDB_id=1029093 NST54_RS08930 WP_368987138.1 1820797..1822032(+) (cinA) [Caldifermentibacillus hisashii strain FSL K6-0152]
MNGEIIAVGSELLLGQIANTNAKFISQQLAGIGVNVFFHTVVGDNAERLKRAVEIAESRSNLIIFTGGLGPTKDDLTKET
IANHLGVKLVHNEAALGSIEEFFRKRNVTMTPNNRKQALVFEHAEVLPNDTGMAPGMVLTKNEITYMLLPGPPSEMEPMF
SNYGMKAILNRLESIDRIESRVLRFFGIGESTLEHTLEDFIDQQTNPTIAPLASDGEVTLRLTAKHPSDLERRRLLDETE
AKIMERVGEFFYGHDETTIIKEMGNLIESNNMTLSVAESLTGGLFQEEVTSIAGVSKWFKGGIVSYSPEIKINVLGVNQD
TVETYGVVSKECAMEMAKNVRKLMDTDIGISFTGVAGPASLEGKEPGSVYIGVSFKNKPTASHFVLLPGNRETVRVRAVK
TGAWYILKELR

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=1029093 NST54_RS08930 WP_368987138.1 1820797..1822032(+) (cinA) [Caldifermentibacillus hisashii strain FSL K6-0152]
TTGAATGGTGAAATTATTGCAGTTGGGTCTGAATTATTACTTGGCCAAATTGCTAATACGAATGCAAAATTTATTTCTCA
ACAATTGGCCGGTATTGGGGTAAATGTATTTTTTCATACCGTTGTTGGGGATAATGCCGAGCGGTTGAAAAGAGCGGTGG
AAATTGCCGAAAGTCGTTCCAATTTAATTATTTTTACGGGTGGCTTAGGGCCTACAAAAGATGATTTAACAAAAGAAACC
ATTGCAAATCATCTGGGAGTGAAGCTTGTTCATAATGAAGCGGCTCTTGGCTCGATAGAAGAATTTTTTAGAAAACGGAA
TGTTACCATGACACCGAATAATCGGAAACAAGCACTTGTTTTTGAACATGCGGAGGTTTTGCCAAACGATACCGGAATGG
CACCGGGAATGGTGTTAACAAAAAATGAAATTACTTATATGCTACTTCCCGGTCCGCCTAGTGAAATGGAGCCGATGTTT
TCAAATTATGGGATGAAAGCAATCCTAAATCGGTTGGAATCCATTGATCGAATTGAATCTCGTGTGTTACGATTTTTTGG
TATTGGTGAATCAACTCTGGAACATACGCTGGAAGATTTCATTGATCAGCAGACAAACCCGACCATTGCCCCGCTCGCTT
CTGATGGCGAAGTGACATTGCGGCTTACAGCTAAACATCCCTCAGATCTTGAACGACGAAGGTTACTGGATGAGACAGAA
GCAAAAATTATGGAGCGGGTGGGTGAATTTTTTTACGGACATGATGAAACAACGATTATCAAAGAAATGGGCAATTTGAT
TGAAAGCAACAACATGACACTTTCGGTAGCTGAAAGTTTAACGGGCGGACTGTTTCAGGAAGAAGTGACATCCATTGCCG
GTGTCAGCAAATGGTTTAAGGGCGGGATCGTATCGTATTCCCCTGAAATAAAAATAAATGTACTTGGCGTAAATCAGGAC
ACTGTTGAAACTTATGGTGTCGTCAGCAAAGAATGTGCGATGGAGATGGCAAAAAATGTCCGAAAATTGATGGACACTGA
TATCGGAATCAGCTTTACCGGTGTTGCCGGACCAGCCTCATTGGAAGGAAAAGAACCCGGTTCAGTATATATTGGTGTGT
CATTTAAGAATAAGCCTACCGCCAGTCATTTTGTCTTATTGCCGGGAAACAGAGAAACGGTTCGTGTCCGTGCCGTAAAA
ACCGGTGCATGGTATATATTAAAGGAACTTCGGTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-404)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

61.179

99.027

0.606
  cinA Streptococcus mutans UA159

45.926

98.54

0.453
  cinA Streptococcus pneumoniae TIGR4

48.042

93.187

0.448
  cinA Streptococcus mitis NCTC 12261

47.781

93.187

0.445
  cinA Streptococcus mitis SK321

47.781

93.187

0.445
  cinA Streptococcus pneumoniae Rx1

47.52

93.187

0.443
  cinA Streptococcus pneumoniae R6

47.52

93.187

0.443
  cinA Streptococcus pneumoniae D39

47.258

93.187

0.44
  cinA Streptococcus suis isolate S10

39.842

92.214

0.367

Multiple sequence alignment