Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NSQ45_RS08480 Genome accession   NZ_CP163263
Coordinates   1772251..1773486 (+) Length   411 a.a.
NCBI ID   WP_368993890.1    Uniprot ID   -
Organism   Caldifermentibacillus hisashii strain FSL K6-2747     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1767251..1778486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ45_RS08455 (NSQ45_08455) - 1768216..1768947 (+) 732 WP_328186716.1 SDR family oxidoreductase -
  NSQ45_RS08460 (NSQ45_08460) - 1769188..1769445 (+) 258 WP_034769894.1 DUF3243 domain-containing protein -
  NSQ45_RS08465 (NSQ45_08465) - 1769776..1770567 (+) 792 WP_328186718.1 DUF3388 domain-containing protein -
  NSQ45_RS08470 (NSQ45_08470) - 1770585..1771481 (+) 897 WP_343127708.1 RodZ domain-containing protein -
  NSQ45_RS08475 (NSQ45_08475) pgsA 1771599..1772177 (+) 579 WP_041846562.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NSQ45_RS08480 (NSQ45_08480) cinA 1772251..1773486 (+) 1236 WP_368993890.1 competence/damage-inducible protein A Machinery gene
  NSQ45_RS08485 (NSQ45_08485) - 1773685..1773933 (+) 249 WP_034769901.1 hypothetical protein -
  NSQ45_RS08490 (NSQ45_08490) - 1773981..1774331 (+) 351 WP_034769902.1 hypothetical protein -
  NSQ45_RS08495 (NSQ45_08495) - 1774469..1774915 (+) 447 WP_095141167.1 YaiI/YqxD family protein -
  NSQ45_RS08500 (NSQ45_08500) - 1775050..1775187 (+) 138 WP_343127709.1 hypothetical protein -
  NSQ45_RS08505 (NSQ45_08505) - 1775203..1775649 (-) 447 WP_368993891.1 hypothetical protein -
  NSQ45_RS08510 (NSQ45_08510) - 1775720..1777078 (+) 1359 WP_368993892.1 transposase family protein -
  NSQ45_RS08515 (NSQ45_08515) - 1777286..1777528 (-) 243 WP_343127711.1 hypothetical protein -
  NSQ45_RS08520 (NSQ45_08520) - 1778001..1778102 (+) 102 WP_082026100.1 putative holin-like toxin -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 45215.72 Da        Isoelectric Point: 4.9457

>NTDB_id=1029045 NSQ45_RS08480 WP_368993890.1 1772251..1773486(+) (cinA) [Caldifermentibacillus hisashii strain FSL K6-2747]
MNGEIIAVGSELLLGQIANTNAKFISQQLAGIGVNVFYHTVVGDNAERLKRAVEIAESRSNLIIFIGGLGPTKDDLTKET
IANHLGVKLVHNEAALGSIEEFFRKRNVTMTPNNRKQALVFEHAEVLPNDTGMAPGMVLTKNEITYMLLPGPPSEMEPMF
SNYGMKAILNRLESIDRIESRVLRFFGIGESTLEHTLEDFIDQQTNPTIAPLASDGEVTLRLTAKHPSDLERRRLLDETE
AKIMERVGEFFYGYDETTIIKEMGNLIESNNMTLSVAESLTGGLFQEEVTSIAGVSKWFQGGIVSYSPEIKINVLGVNPD
TVETYGVVSKECAMEMAENVRKLMDTDIGISFTGVAGPASLEGKEPGSVYIGVSFKNKPTASHFVLLPGNRETVRVRAVK
TGAWYILKELR

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=1029045 NSQ45_RS08480 WP_368993890.1 1772251..1773486(+) (cinA) [Caldifermentibacillus hisashii strain FSL K6-2747]
TTGAATGGTGAAATTATTGCCGTAGGGTCCGAATTATTACTTGGCCAAATTGCTAATACGAATGCAAAATTTATTTCTCA
ACAATTGGCCGGTATTGGGGTAAATGTATTTTACCATACCGTTGTTGGGGATAATGCCGAGCGGTTGAAAAGAGCGGTGG
AAATTGCCGAAAGTCGTTCCAATTTAATTATTTTTATTGGTGGCTTAGGGCCTACAAAAGATGATTTAACAAAAGAAACC
ATTGCAAATCATCTGGGAGTAAAGCTTGTTCATAATGAAGCGGCTCTTGGCTCGATAGAAGAATTTTTTAGAAAACGGAA
TGTTACCATGACACCGAATAATCGGAAACAAGCACTTGTTTTTGAACATGCGGAGGTTTTGCCAAACGATACCGGAATGG
CACCGGGAATGGTGTTAACAAAAAATGAAATTACTTATATGCTACTTCCCGGTCCGCCTAGTGAAATGGAGCCGATGTTT
TCAAATTATGGTATGAAAGCAATCCTAAATCGGTTGGAATCCATTGATCGAATTGAATCTCGTGTGTTACGATTTTTTGG
TATTGGTGAATCAACTCTGGAACATACGCTGGAAGATTTCATTGATCAGCAGACAAACCCGACCATTGCCCCGCTCGCTT
CTGATGGCGAAGTGACATTGCGGCTTACAGCTAAACATCCCTCAGATCTTGAACGAAGAAGGTTACTGGATGAGACAGAA
GCAAAAATTATGGAGCGGGTGGGTGAATTTTTTTACGGATATGATGAAACAACGATTATCAAAGAAATGGGCAATTTGAT
TGAAAGCAACAACATGACACTTTCGGTAGCTGAAAGTTTAACGGGCGGACTGTTTCAGGAAGAAGTGACATCCATTGCCG
GTGTCAGCAAATGGTTTCAGGGCGGGATCGTATCGTATTCCCCTGAAATAAAAATAAATGTACTTGGCGTAAATCCGGAC
ACTGTTGAAACTTATGGTGTCGTCAGTAAAGAATGCGCAATGGAGATGGCAGAAAATGTCCGAAAATTGATGGACACTGA
TATCGGAATCAGCTTTACCGGTGTTGCCGGACCAGCCTCATTGGAAGGAAAAGAACCCGGTTCAGTTTATATTGGTGTGT
CATTTAAGAATAAGCCTACCGCTAGTCATTTTGTCTTATTGCCGGGAAACAGAGAAACGGTTCGTGTCCGTGCCGTAAAA
ACCGGTGCATGGTATATATTAAAGGAACTTCGGTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-404)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

61.425

99.027

0.608
  cinA Streptococcus mutans UA159

45.926

98.54

0.453
  cinA Streptococcus pneumoniae TIGR4

47.781

93.187

0.445
  cinA Streptococcus mitis NCTC 12261

47.52

93.187

0.443
  cinA Streptococcus mitis SK321

47.52

93.187

0.443
  cinA Streptococcus pneumoniae Rx1

47.52

93.187

0.443
  cinA Streptococcus pneumoniae R6

47.52

93.187

0.443
  cinA Streptococcus pneumoniae D39

47.258

93.187

0.44
  cinA Streptococcus suis isolate S10

39.578

92.214

0.365

Multiple sequence alignment