Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AB4L27_RS09850 Genome accession   NZ_CP162907
Coordinates   2104976..2106085 (+) Length   369 a.a.
NCBI ID   WP_006742929.1    Uniprot ID   -
Organism   Vibrio diabolicus strain 3098     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2099976..2111085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4L27_RS09830 (AB4L27_09830) rsmB 2100896..2102179 (-) 1284 WP_368848736.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  AB4L27_RS09835 (AB4L27_09835) fmt 2102260..2103207 (-) 948 WP_025606610.1 methionyl-tRNA formyltransferase -
  AB4L27_RS09840 (AB4L27_09840) def 2103241..2103759 (-) 519 WP_005379068.1 peptide deformylase -
  AB4L27_RS09845 (AB4L27_09845) - 2103898..2104992 (+) 1095 WP_368848737.1 LysM peptidoglycan-binding domain-containing protein -
  AB4L27_RS09850 (AB4L27_09850) dprA 2104976..2106085 (+) 1110 WP_006742929.1 DNA-processing protein DprA Machinery gene
  AB4L27_RS09855 (AB4L27_09855) - 2106088..2106567 (+) 480 WP_005379074.1 DUF494 family protein -
  AB4L27_RS09860 (AB4L27_09860) - 2106644..2107213 (+) 570 WP_065646625.1 type I DNA topoisomerase -
  AB4L27_RS09865 (AB4L27_09865) - 2107279..2108412 (-) 1134 WP_258618976.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  AB4L27_RS09870 (AB4L27_09870) purE 2108417..2108902 (-) 486 WP_046874601.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  AB4L27_RS09875 (AB4L27_09875) - 2109102..2109659 (+) 558 WP_046874602.1 L-threonylcarbamoyladenylate synthase -
  AB4L27_RS09880 (AB4L27_09880) hemF 2109707..2110624 (+) 918 WP_005394013.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 40085.73 Da        Isoelectric Point: 6.7200

>NTDB_id=1027983 AB4L27_RS09850 WP_006742929.1 2104976..2106085(+) (dprA) [Vibrio diabolicus strain 3098]
MNRRNNDDLAAWLKLSCLPGIGGVKMNKLLARDTPRNIVNFSPEQLQQLGLTTKQIQAWASTDKEVDACLSWLEASTNHH
ILTLTDPLYPPQLKQIVAPPPLLFVQGNSTCLSQPQIAMVGSRNASIDGLQHARHFAAEFVQHDFIVTSGLALGIDGHAH
DGALQAKGKTIAVLGSGLENIYPARHRGLAQRVIEHGALVSEFRPNAKPRPENFPRRNRIISGLSLGVLVVEAAERSGSL
ITARYALEQGREVFALPASINAPNASGGNQLIRHGACLVEKTKDVLDEIQSLLDWSINQSTDLFSTLNDEEELPFPQLLA
NVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=1027983 AB4L27_RS09850 WP_006742929.1 2104976..2106085(+) (dprA) [Vibrio diabolicus strain 3098]
ATGAATCGACGAAATAACGATGATCTCGCTGCCTGGTTAAAACTGAGTTGTTTACCAGGCATTGGCGGGGTCAAAATGAA
TAAGCTACTGGCAAGAGACACGCCGCGTAACATCGTAAACTTCTCTCCCGAACAGCTACAACAACTTGGGTTAACAACTA
AGCAAATTCAAGCTTGGGCTTCAACAGATAAAGAAGTTGATGCCTGTTTAAGTTGGCTTGAGGCTTCTACAAATCATCAT
ATCCTGACACTGACTGACCCTCTTTATCCACCTCAACTCAAACAAATCGTTGCGCCGCCACCTCTGCTTTTTGTTCAAGG
AAATTCTACTTGTCTTTCGCAGCCACAAATAGCAATGGTTGGCAGCCGAAATGCGAGTATTGATGGCTTACAGCATGCAC
GCCACTTTGCCGCAGAATTTGTTCAGCACGATTTTATTGTCACCAGTGGTCTCGCTTTAGGCATTGACGGTCATGCGCAT
GATGGTGCGTTGCAAGCAAAAGGTAAGACGATTGCGGTGCTGGGATCTGGCTTAGAAAATATTTATCCGGCACGTCATCG
TGGTTTAGCGCAACGTGTTATTGAACATGGGGCTTTGGTGTCTGAGTTTCGCCCCAACGCCAAGCCGCGCCCGGAAAACT
TCCCGCGTCGAAACCGCATTATTAGCGGATTATCGCTAGGTGTGTTAGTTGTGGAAGCGGCGGAAAGGAGTGGCTCGTTA
ATTACTGCTCGTTACGCGCTTGAGCAAGGTCGAGAAGTGTTTGCGCTGCCAGCTTCGATAAATGCCCCTAATGCCAGCGG
TGGCAACCAGTTGATACGTCATGGTGCTTGCCTCGTAGAAAAGACGAAAGATGTCTTAGATGAAATACAGTCTTTGCTTG
ATTGGTCTATTAATCAGAGTACCGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAGGAAGTCATGATGCAGCT
CTTAGAGTTAGAACTCTCTGGGCATGTCGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)

DprA winged helix domain (DprA_WH)

(317-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

83.74

100

0.837
  dprA Vibrio cholerae strain A1552

57.027

100

0.572
  dprA Glaesserella parasuis strain SC1401

46.774

100

0.472
  dprA Legionella pneumophila strain ERS1305867

44.321

97.832

0.434
  dprA Haemophilus influenzae Rd KW20

45.533

94.038

0.428
  dprA Neisseria meningitidis strain C311

37.374

100

0.401
  dprA Neisseria meningitidis MC58

37.374

100

0.401
  dprA Neisseria gonorrhoeae MS11

35.787

100

0.382
  dprA Neisseria gonorrhoeae strain FA1090

35.533

100

0.379

Multiple sequence alignment