Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AB3327_RS10320 Genome accession   NZ_CP162863
Coordinates   2287932..2289194 (-) Length   420 a.a.
NCBI ID   WP_105919783.1    Uniprot ID   -
Organism   Lactiplantibacillus pentosus strain PCZ4     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2282932..2294194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3327_RS10295 (AB3327_10295) - 2283115..2284470 (+) 1356 WP_105919787.1 aspartate kinase -
  AB3327_RS10300 (AB3327_10300) - 2284732..2285571 (-) 840 WP_368823835.1 amino acid ABC transporter substrate-binding protein -
  AB3327_RS10305 (AB3327_10305) - 2285587..2286228 (-) 642 WP_050339358.1 amino acid ABC transporter ATP-binding protein -
  AB3327_RS10310 (AB3327_10310) - 2286241..2286882 (-) 642 WP_056952760.1 amino acid ABC transporter permease -
  AB3327_RS10315 (AB3327_10315) minD 2287364..2287921 (-) 558 Protein_1984 septum site-determining protein MinD -
  AB3327_RS10320 (AB3327_10320) cinA 2287932..2289194 (-) 1263 WP_105919783.1 competence/damage-inducible protein A Machinery gene
  AB3327_RS10325 (AB3327_10325) pgsA 2289663..2290247 (-) 585 WP_105919784.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB3327_RS10330 (AB3327_10330) - 2290270..2291142 (-) 873 WP_050339353.1 RodZ domain-containing protein -
  AB3327_RS10335 (AB3327_10335) - 2291246..2292547 (-) 1302 WP_105919785.1 pitrilysin family protein -
  AB3327_RS10340 (AB3327_10340) - 2292544..2293809 (-) 1266 WP_105919786.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45089.16 Da        Isoelectric Point: 5.9122

>NTDB_id=1027901 AB3327_RS10320 WP_105919783.1 2287932..2289194(-) (cinA) [Lactiplantibacillus pentosus strain PCZ4]
MQAEIIAVGTEILLGQITNTNSTHIARGLAELGIDSYYQTVVGDNPQRLSAVIEIAAQRNDLVILTGGLGPTADDLTKQT
LAHYLNVPLVEDAAAMQKITDWFAKNEQVMTTNNRQQALYPQGAQPLVNHNGMAVGAFYQSSDSADFLLLPGPPRELAVM
FDREAKPKLAAAYGDQAQIYSRVMRFYGITESALATKLQPLIDNQTAVTIAPYAKTNEVTLRLSAQAKTESAAKAAIDQV
DQQIKTLIGRYFYGYGDDNSLVNVVVKQLIDAKLSITAAESLTAGLFQSTLGSVSGVSAVFPGGFVTYANEVKHQLVNVP
QDIIDTDGVVSEATAKAMALGAQQQLQTDVAVSFTGVAGPDKLEGQPAGTVWIGLAYRQHAPIAQQFHFAGGRQRIRQRS
VMAGLDLLRHALSSDSTLKK

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=1027901 AB3327_RS10320 WP_105919783.1 2287932..2289194(-) (cinA) [Lactiplantibacillus pentosus strain PCZ4]
ATGCAGGCAGAGATAATCGCGGTCGGTACCGAGATTTTATTAGGACAAATCACGAATACGAACAGTACGCACATTGCACG
TGGACTGGCTGAGTTAGGCATTGACAGTTACTATCAGACCGTGGTGGGTGATAATCCGCAACGGCTGTCAGCGGTAATTG
AAATTGCGGCGCAACGCAATGATTTAGTGATTTTAACGGGTGGTCTTGGACCGACTGCGGATGATTTAACGAAGCAGACA
TTGGCACATTATTTAAATGTACCGTTAGTCGAAGATGCAGCAGCAATGCAAAAAATCACCGACTGGTTTGCAAAAAATGA
ACAGGTCATGACCACTAACAACCGGCAACAAGCGCTGTATCCGCAAGGCGCTCAGCCGTTAGTCAATCATAACGGCATGG
CGGTCGGTGCGTTTTATCAATCGTCTGACAGCGCGGATTTCTTATTGTTGCCAGGGCCACCACGTGAGTTAGCGGTGATG
TTTGACCGGGAAGCTAAGCCGAAGCTGGCAGCAGCTTATGGCGACCAGGCTCAGATTTATTCGCGGGTGATGCGGTTTTA
CGGGATAACCGAATCGGCACTTGCGACCAAGTTACAACCGCTAATTGACAATCAGACGGCGGTGACGATTGCACCGTATG
CCAAGACGAATGAAGTGACCTTACGTTTGAGTGCCCAGGCTAAGACTGAGTCGGCTGCCAAAGCGGCAATCGACCAAGTT
GACCAACAGATCAAAACGTTGATTGGACGCTATTTCTATGGCTACGGTGATGATAATTCATTGGTCAACGTGGTGGTAAA
ACAGCTGATTGATGCTAAGTTGAGCATTACGGCCGCCGAAAGCTTAACCGCTGGCTTGTTTCAGAGTACCCTTGGGAGCG
TGTCAGGTGTTTCGGCAGTTTTTCCAGGTGGCTTTGTGACGTATGCAAATGAAGTTAAGCATCAGCTGGTCAATGTGCCT
CAAGACATCATTGATACCGATGGGGTGGTGTCCGAGGCAACTGCTAAAGCCATGGCTTTAGGCGCACAACAGCAGCTACA
GACGGACGTTGCCGTCAGTTTCACCGGTGTCGCAGGTCCCGATAAGCTAGAAGGGCAACCGGCTGGCACGGTTTGGATTG
GCTTAGCTTATCGGCAGCATGCGCCAATTGCTCAGCAATTCCACTTTGCGGGGGGACGACAACGTATTCGTCAGCGCAGC
GTGATGGCCGGATTAGACCTATTACGGCATGCATTGTCGTCGGATTCGACACTGAAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-411)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

49.766

100

0.507
  cinA Streptococcus pneumoniae TIGR4

49.647

100

0.502
  cinA Streptococcus pneumoniae Rx1

49.647

100

0.502
  cinA Streptococcus pneumoniae R6

49.647

100

0.502
  cinA Streptococcus pneumoniae D39

49.412

100

0.5
  cinA Streptococcus mitis NCTC 12261

49.065

100

0.5
  cinA Streptococcus mutans UA159

48.463

100

0.488
  cinA Bacillus subtilis subsp. subtilis str. 168

45.946

96.905

0.445
  cinA Streptococcus suis isolate S10

40.528

99.286

0.402

Multiple sequence alignment