Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AB3327_RS10270 Genome accession   NZ_CP162863
Coordinates   2277029..2278291 (-) Length   420 a.a.
NCBI ID   WP_105919783.1    Uniprot ID   -
Organism   Lactiplantibacillus pentosus strain PCZ4     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2272029..2283291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3327_RS10255 (AB3327_10255) - 2273081..2273887 (-) 807 WP_050339348.1 TIGR00282 family metallophosphoesterase -
  AB3327_RS10260 (AB3327_10260) rny 2274011..2275570 (-) 1560 WP_050339349.1 ribonuclease Y -
  AB3327_RS10265 (AB3327_10265) recA 2275801..2276937 (-) 1137 WP_050339350.1 recombinase RecA Machinery gene
  AB3327_RS10270 (AB3327_10270) cinA 2277029..2278291 (-) 1263 WP_105919783.1 competence/damage-inducible protein A Machinery gene
  AB3327_RS10275 (AB3327_10275) pgsA 2278759..2279343 (-) 585 WP_105919784.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB3327_RS10280 (AB3327_10280) - 2279366..2280238 (-) 873 WP_050339353.1 RodZ domain-containing protein -
  AB3327_RS10285 (AB3327_10285) - 2280342..2281643 (-) 1302 WP_105919785.1 pitrilysin family protein -
  AB3327_RS10290 (AB3327_10290) - 2281640..2282905 (-) 1266 WP_105919786.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45089.16 Da        Isoelectric Point: 5.9122

>NTDB_id=1027900 AB3327_RS10270 WP_105919783.1 2277029..2278291(-) (cinA) [Lactiplantibacillus pentosus strain PCZ4]
MQAEIIAVGTEILLGQITNTNSTHIARGLAELGIDSYYQTVVGDNPQRLSAVIEIAAQRNDLVILTGGLGPTADDLTKQT
LAHYLNVPLVEDAAAMQKITDWFAKNEQVMTTNNRQQALYPQGAQPLVNHNGMAVGAFYQSSDSADFLLLPGPPRELAVM
FDREAKPKLAAAYGDQAQIYSRVMRFYGITESALATKLQPLIDNQTAVTIAPYAKTNEVTLRLSAQAKTESAAKAAIDQV
DQQIKTLIGRYFYGYGDDNSLVNVVVKQLIDAKLSITAAESLTAGLFQSTLGSVSGVSAVFPGGFVTYANEVKHQLVNVP
QDIIDTDGVVSEATAKAMALGAQQQLQTDVAVSFTGVAGPDKLEGQPAGTVWIGLAYRQHAPIAQQFHFAGGRQRIRQRS
VMAGLDLLRHALSSDSTLKK

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=1027900 AB3327_RS10270 WP_105919783.1 2277029..2278291(-) (cinA) [Lactiplantibacillus pentosus strain PCZ4]
ATGCAGGCAGAGATAATCGCGGTCGGTACCGAGATTTTATTAGGACAAATCACGAATACGAACAGTACGCACATTGCACG
TGGACTGGCTGAGTTAGGCATTGACAGTTACTATCAGACCGTGGTGGGTGATAATCCGCAACGGCTGTCAGCGGTAATTG
AAATTGCGGCGCAACGCAATGATTTAGTGATTTTAACGGGTGGTCTTGGACCGACTGCGGATGATTTAACGAAGCAGACA
TTGGCACATTATTTAAATGTACCGTTAGTCGAAGATGCAGCAGCAATGCAAAAAATCACCGACTGGTTTGCAAAAAATGA
ACAGGTCATGACCACTAACAACCGGCAACAAGCGCTGTATCCGCAAGGCGCTCAGCCGTTAGTCAATCATAACGGCATGG
CGGTCGGTGCGTTTTATCAATCGTCTGACAGCGCGGATTTCTTATTGTTGCCAGGGCCACCACGTGAGTTAGCGGTGATG
TTTGACCGGGAAGCTAAGCCGAAGCTGGCAGCAGCTTATGGCGACCAGGCTCAGATTTATTCGCGGGTGATGCGGTTTTA
CGGGATAACCGAATCGGCACTTGCGACCAAGTTACAACCGCTAATTGACAATCAGACGGCGGTGACGATTGCACCGTATG
CCAAGACGAATGAAGTGACCTTACGTTTGAGTGCCCAGGCTAAGACTGAGTCGGCTGCCAAAGCGGCAATCGACCAAGTT
GACCAACAGATCAAAACGTTGATTGGACGCTATTTCTATGGCTACGGTGATGATAATTCATTGGTCAACGTGGTGGTAAA
ACAGCTGATTGATGCTAAGTTGAGCATTACGGCCGCCGAAAGCTTAACCGCTGGCTTGTTTCAGAGTACCCTTGGGAGCG
TGTCAGGTGTTTCGGCAGTTTTTCCAGGTGGCTTTGTGACGTATGCAAATGAAGTTAAGCATCAGCTGGTCAATGTGCCT
CAAGACATCATTGATACCGATGGGGTGGTGTCCGAGGCAACTGCTAAAGCCATGGCTTTAGGCGCACAACAGCAGCTACA
GACGGACGTTGCCGTCAGTTTCACCGGTGTCGCAGGTCCCGATAAGCTAGAAGGGCAACCGGCTGGCACGGTTTGGATTG
GCTTAGCTTATCGGCAGCATGCGCCAATTGCTCAGCAATTCCACTTTGCGGGGGGACGACAACGTATTCGTCAGCGCAGC
GTGATGGCCGGATTAGACCTATTACGGCATGCATTGTCGTCGGATTCGACACTGAAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-411)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

49.766

100

0.507
  cinA Streptococcus pneumoniae TIGR4

49.647

100

0.502
  cinA Streptococcus pneumoniae Rx1

49.647

100

0.502
  cinA Streptococcus pneumoniae R6

49.647

100

0.502
  cinA Streptococcus pneumoniae D39

49.412

100

0.5
  cinA Streptococcus mitis NCTC 12261

49.065

100

0.5
  cinA Streptococcus mutans UA159

48.463

100

0.488
  cinA Bacillus subtilis subsp. subtilis str. 168

45.946

96.905

0.445
  cinA Streptococcus suis isolate S10

40.528

99.286

0.402

Multiple sequence alignment